AT5G58980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.840 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Neutral/alkaline non-lysosomal ceramidase | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Neutral/alkaline non-lysosomal ceramidase; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT1G07380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23811449..23814395 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81842.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 733 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRWSMSMHC TLFLLFLLRL TCIFSDSDYL MGLGSYDITG PAADVNMMGY ANMEQVASGV HFRLRARAFI VAEPYKKRIA FVNLDAGMAS QLVTIKVIER 101: LKQRYGELYT EENVAISGTH THAGPGGYLQ YILYLVTSLG FVHQSFNALV DGIEQSIIQA HENLRPGSIL INKGELLDAG VNRSPSAYLN NPAHERSKYE 201: YDVDKEMTLV KFVDDQWGPV ARIMEDWFER ENGCRSVDVE SPRRVSSIIS DPYDQDLMEM ASSLLSTGGK TVTRMSSVAR RVRSRFRHAD KPRFVSAFCQ 301: TNCGDVSPNV LGAFCIDTGL PCEFNQSTCG GKNEQCYGRG PGYPDEFEST RIIGERQFKK AADLFTKASE EIQGKVDYRH AYVDFSQLEV TINGQNGGSE 401: VVKTCPAAMG FGFAAGTTDG PGAFDFKQGD DQGNPFWRLV RNLLKNPTEE QVRCQRPKPI LLDTGEMKQP YDWAPSILPV QILRIGQLVI LCVPGEFTTM 501: AGRRLRDAVK TVLKEGSNGR EFSVVIAGLT NSYSQYIATF EEYQVQRYEG ASTLYGPHTL SGYIQEFKKL ANDLLSAQTT DPGPQPPDLL HKQISLLTPV 601: VADMTPIGTA FGDVTSDVPR LSKFRKGADI VRVQFRSANP RNDLMTEGTF ALVERWLEGR ETWVPVYDDD DFCLRFKWSR PFKLSTQSTA TIEWRIPETA 701: SPGVYRITHF GSAKTPISSI HHFSGSSSAF VVY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)