AT1G63530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G63540.1); Has 10212 Blast hits to 4024 proteins in 434 species: Archae - 1; Bacteria - 1259; Metazoa - 3608; Fungi - 2247; Plants - 291; Viruses - 90; Other Eukaryotes - 2716 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23563654..23565236 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 51049.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVDFSEPEY RNCYHCRDSG ILNTQESEPN NVIGSSITSV PVSSGPFQAL GHASAAIGST STSSPVQSSS SFSFGSAPAA TTSVGVSSTS TPTPISFLPF 101: GYVPPPPPSS SLSGPAQNVP WSISAYSTAG RGVEWAWARP DVAVYPASSS SSSTSTVVFG TTPVSVSSLF GPSQDFPKTT FACCSSTPAP TRCECSFAKP 201: FFGSSPASSS SNLFGPNPST TTASVFGTSA TSGSSLFGPA QHPLSYDSIG GSAFAGVKTS SPQPLGFNGA TTLLPSSHEG QNISSFKPYV DKSHDELRWE 301: YYKKEAKGGS FPAAHASPIG SKPNAVFSPS TVSTSLFASP SVPDHHQRTN FSTTLGNFTG PAFGFFPAAA GGATTFSSTG FGQPNAPFPG FDSQFPSAFS 401: SFSTTYPAVS SSVQRPHETG AVSSPAFGCT ACGATSSSSA SDHFTFNGAT TPPGLFFPTT SSGPMMFGTT LAAQGTTPAL QTYPVQGFIL LPFAAMSLQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)