AT1G59660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleoporin autopeptidase | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G10390.2); Has 64429 Blast hits to 28580 proteins in 1811 species: Archae - 118; Bacteria - 17184; Metazoa - 18465; Fungi - 12106; Plants - 2886; Viruses - 648; Other Eukaryotes - 13022 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21924693..21929233 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103377.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 997 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFGSSNNNPF GQSSISSPFG TQTHSLFGQT NNNASNNPFA TKPFGTSTPF GAQTGSSMFG GTSTGVFGAP QTSSPFGASP QAFGSSTQAF GASSTPSFGS 101: SNSPFGGTST FGQKSFGLST PQSSPFGSTT QQSQPAFGNS TFGSSTPFGA STTPAFGASS TPAFGVSNTS GFGATNTPGF GATNTTGFGG SSTPGFGASS 201: TPAFGSTNTP AFGASSTPLF GSSSSPAFGA SPAPAFGSSG NAFGNNTFSS GGAFGSSSTP TFGASNTSAF GASSSPSFNF GSSPAFGQST SAFGSSSFGS 301: TQSSLGSTPS PFGAQGAQAS TSTFGGQSTI GGQQGGSRVI PYAPTTDTAS GTESKSERLQ SISAMPAHKG KNMEELRWED YQRGDKGGQR STGQSPEGAG 401: FGVTNSQPSI FSTSPAFSQT PVNPTNPFSQ TTPTSNTNFS PSFSQPTTPS FGQPTTPSFR STVSNTTSVF GSSSSLTTNT SQPLGSSIFG STPAHGSTPG 501: FSIGGFNNSQ SSPLFGSNPS FAQNTTPAFS QTSPLFGQNT TPALGQSSSV FGQNTNPALV QSNTFSTPST GFGNTFSSSS SLTTSISPFG QITPAVTPFQ 601: SAQPTQPLGA FGFNNFGQTQ IANTTDIAGA MGTFSQGNFK QQPALGNSAV MQPTPVTNPF GTLPALPQIS IAQGGNSPSI QYGISSMPVV DKPAPVRVSP 701: LLTSRHLLQR RVRLPTRKYR PSDDGPKVPF FSDEEENSST PKADAFFIPR ENPRALFIRP VERVKSEHPK DSPTPLQENG KRSNGVTNGA NHETKDNGAI 801: REAPPVKVNQ KQNGTHENHG GDKNGSHSSP SGADIESLMP KLHHSEYFTE PRIQELAAKE RVEQGYCKRV KDFVVGRHGY GSIKFLGETD VCRLDLEMVV 901: QFKNREVNVY MDESKKPPVG QGLNKPAVVT LLNIKCMDKK TGTQVMEGER LDKYKEMLKR KAGEQGAQFV SYDPVNGEWT FKVEHFSSYK LGDEYDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)