AT3G26240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.924 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G26250.1); Has 1608 Blast hits to 668 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 3; Plants - 1581; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9604335..9607103 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106246.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.60 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||
| Length | 922 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPEAKLILL ILRFNALKSY INSDPEEVMS VISQIISLVK SMVTETETEL MSLISETIDF FKEMDLESQP NSLRKLISLI SRTHFVNSSD WEEPVPESTL 101: MSLIKETWSM KPQPELISLI QKIISLVDNS PELKLKSFIT QLIFLDDNLS ERLNWNYSRR FLSLSRYIIS LATSVDWNLQ PKPESELMSL TNQSISVFNS 201: MDVDSQPEPL RNLISLISLA SFRSSPTNLR YSKPNMVDIL NLFKDKTVEF ETGSLTKRVV WKSLNKKLFL LVTETLSLDP EPKLISLIHR IFSHVLSMNS 301: KWKNLISLCP QVQVILKKGK FHVIEQGLWT RNQKWDDPVS DDDSTEARVV SWRKNKWDCL PFNWDKFMLT EEKDDTHFVC RGCYGENHED NSKAPVEIKH 401: PLHPKHSLQL ALFNDDKTRQ CYCCHELLRD DTASMFYFCS PCDFGLKFTC AKKSPVLSID QPKWHEHTLA LFPSQDPQTC SLCALKHSNL VFYICPPCDF 501: IIHQSCFSLP HVIRISRHLH CISFTHSFRK GDWICGVCRR KINNDYGGYH CIKKGCLYAV HSKCATQPNV WDGIEREGES EEEVEELEPF LTISDGIIQH 601: FSHEHHHLTL DENNGKDYDE NKLCQACIMP IYFGNSYSCL QCDFILHEEC ANLSRRLHHP IHPHLLTLIS DNPLRDVGSW NNSDRDYCSA CPSLCISGFF 701: YKCSKIDCDF RLHVQCATIS EPLLHPSHMH HLFLTSKPNE ERNCSVCAKA PGEYTKETFN CIEEECDYAL CFKCATLPQQ VRYKHDKHIL PLSYGKKTSD 801: MTYWCEACEG KINPEEGFYR CDEYCCVHLH ITCLLGKDLY LKPRSSWSLS CGALLILPNY LWMSRPICSS CGNRCPQRIF LFLLSGASFF CSVYCIPTTR 901: ELGFFPGLEA GELALILSSF RS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)