AT5G11580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.907 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3718913..3721125 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60546.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||
| Length | 553 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDKSPTLLI SEDLSRKIIS LAAGEAHTIA LTGDGCVYSW GRGMFGRLGT GKESDELVPV LVEFPNQAEG DRIRIVGVAA GAYHSLAVSD DGSVWCWGYN 101: IYGQLGFDGE NSLAPCLIKN LFERETSSSS LNDSGREVGS DLKVCTVKAG SMMSLAIDNV GGLWMWGNVP PQDSEPDPRL SFTSIPIPFP ILDFHGRTVL 201: KVACGDEHVV ALVGPGDIHK DNSYDVSVLY SWGNNHHGQL GLGDGESRAR PQTVETFNQK SGLTVYDIAC GAHHTALLTY RKETPKGPSI CWTFGFGENG 301: QLGHRSNKSS SLPEPVSDLP EHAYLVSVDC GLFHTSVVSS EGYVWSWGME RGLGLCPDVN FTEVEAGDDS VPRKISGGSS RFRDPVQVSC GAAHTVLVVD 401: GGYKLWSWGR GRNGVLGTGN VSDCYVPTLV FWPNELKPEK EEVPDDGKSA STEEIKRLES KLMVMERYAS ILHGSIFGKP FNEEEDIPYS LRVSGYFDMG 501: KEWGEMLESA DKSQLMRLQA FYEDMIGRVK DKVLQRRIQE IMKDCLQSSA PKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)