AT1G23400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding CRS1 / YhbY (CRM) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Promotes the splicing of chloroplast group II introns. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CAF2; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT2G20020.1); Has 265 Blast hits to 223 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 261; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8312199..8314740 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63605.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIVASLRDI NLFSSLPSTP PMADSSSGTF RPAPPIPIPK YAPSNRNRNQ KTNHQTDTNP KKPQSNPALK LPHHRTRYYK PVKEGVISSD GDRTILIGDS 101: GVSYQLPGAP FEFQFSYSET PKVKPVGIRE PAFMPFAPPT MPRPWTGKAP LKKSKKKIPL FDSFNPPPAG KSGVKYVEMP GPLPFGRYPK EGMNREEVLG 201: EPLKRWEKGM LIKPHMHDNR QVNLGRDGFT HNMLELIHSH WKRRRVCKVR CKGVPTVDMN NVCRVLEEKT GGEIIHRVGG VVYLFRGRNY NYRTRPQYPL 301: MLWKPAAPVY PKLIQEVPEG LTKEEAHEFR VKGKSLRPIC KLSKNGVYVS LVKDVRDAFE LSSLVKVDCP GLEPSDYKKI GAKLKELVPC VLLSFDDEQI 401: LMWRGREWKS RFVDNPLIPS LSETNTTNEL DPSDKPSEEQ TVANPSTTIS SPKMISLWQR ALESSKAVIL EELDLGPDDL LKKVEELEGT SLAAEHTYTA 501: MVLSNTDGAA EDYVDEKDRS EEYYSDIDDD FDDECSDDES LDPVGPVGSL PVDKIVRKLR ERLK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)