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AT5G05060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cystatin/monellin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cystatin/monellin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G05040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:830388eggNOG:ENOG410JVVWeggNOG:ENOG41105IDEMBL:AB005245
EMBL:AY034952EMBL:AY062995EMBL:CP002688EnsemblPlants:AT5G05060
EnsemblPlants:AT5G05060.1entrez:830388GeneID:830388Gramene:AT5G05060.1
hmmpanther:PTHR31228hmmpanther:PTHR31228:SF6HOGENOM:HOG000064705InterPro:IPR006525
KEGG:ath:AT5G05060PhylomeDB:Q9FF68Proteomes:UP000006548RefSeq:NP_196125.1
SMR:Q9FF68SUPFAM:SSF54403TAIR:AT5G05060TIGRfam:TIGR01638
TIGRFAMs:TIGR01638UniGene:At.8384UniProt:Q9FF68
Coordinates (TAIR10) chr5:-:1494334..1494999
Molecular Weight (calculated) 19610.60 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.72
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSPIENERS EIPSPEKLKL VEEPSDDESK FSNYDSDDWE TLSDDLRLLD EEWGKSGGFD VDFSKVRHRF GRGAVHLDDD NMVSEPHETN RDLLNRLSNM
101: AISFYNDKTG IKLELVKVLR ANFHPSAAIT LYITFEANDP SDGNQTKRYQ AVVRYLSFDI EVCSCNPEPS SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)