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AT5G17880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.658
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : disease resistance protein (TIR-NBS-LRR class)
Curator
Summary (TAIR10)
Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.
Computational
Description (TAIR10)
constitutive shade-avoidance1 (CSA1); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: response to light stimulus, defense response to bacterium, response to red light, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886EMBL:AB011480EMBL:CP002688EnsemblPlants:AT5G17880
EnsemblPlants:AT5G17880.1entrez:831656Gene3D:3.40.50.10140Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:831656Genevisible:F4KIF3GO:GO:0005524
GO:GO:0007165GO:GO:0007275GO:GO:0009416GO:GO:0010114
GO:GO:0042742GO:GO:0043531Gramene:AT5G17880.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF157InParanoid:F4KIF3InterPro:IPR000157InterPro:IPR002182
InterPro:IPR011713InterPro:IPR027417InterPro:IPR032675iPTMnet:F4KIF3
KEGG:ath:AT5G17880ncoils:CoilOMA:ERVWEDNPaxDb:F4KIF3
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104
PRIDE:F4KIF3PRO:PR:F4KIF3PROSITE:PS50104ProteinModelPortal:F4KIF3
Proteomes:UP000006548RefSeq:NP_197290.1SMART:SM00255SMR:F4KIF3
STRING:3702.AT5G17880.1SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT5G17880tair10-symbols:CSA1UniGene:At.31499UniProt:F4KIF3
Coordinates (TAIR10) chr5:-:5908874..5913096
Molecular Weight (calculated) 135867.00 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.39
Length 1197 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTSSSSWVKT DGETPQDQVF INFRGVELRK NFVSHLEKGL KRKGINAFID TDEEMGQELS VLLERIEGSR IALAIFSPRY TESKWCLKEL AKMKERTEQK
0101: ELVVIPIFYK VQPVTVKELK GDFGDKFREL VKSTDKKTKK EWKEALQYVP FLTGIVLDEK SDEDEVINII IRKVKEILNR RSEGPPSKCS ALPPQRHQKR
0201: HETFWGIELR IKQLEEKLRF GSDETTRTIG VVGMPGIGKT TLATMLYEKW NDRFLRHVLI RDIHEASEED GLNYLATKFL QGLLKVENAN IESVQAAHEA
0301: YKDQLLETKV LVILDNVSNK DQVDALLGER NWIKKGSKIL ITTSDKSLMI QSLVNDTYEV PPLSDKDAIK HFIRYAFDGN EGAAPGPGQG NFPKLSKDFV
0401: HYTKGNPLAL QMLGKELLGK DESHWGLKLN ALDQHHNSPP GQSICKMLQR VWEGSYKALS QKEKDALLDI ACFRSQDENY VASLLDSDGP SNILEDLVNK
0501: FMINIYAGKV DMHDTLYMLS KELGREATAT DRKGRHRLWH HHTIIAVLDK NKGGSNIRSI FLDLSDITRK WCFYRHAFAM MRDLRYLKIY STHCPQECES
0601: DIKLNFPEGL LLPLNEVRYL HWLKFPLKEV PQDFNPGNLV DLKLPYSEIE RVWEDNKDAP KLKWVNLNHS KKLNTLAGLG KAQNLQELNL EGCTALKEMH
0701: VDMENMKFLV FLNLRGCTSL KSLPEIQLIS LKTLILSGCS KFKTFQVISD KLEALYLDGT AIKELPCDIG RLQRLVMLNM KGCKKLKRLP DSLGQLKALE
0801: ELILSGCSKL NEFPETWGNM SRLEILLLDE TAIKDMPKIL SVRRLCLNKN EKISRLPDLL NKFSQLQWLH LKYCKNLTHV PQLPPNLQYL NVHGCSSLKT
0901: VAKPLVCSIP MKHVNSSFIF TNCNELEQAA KEEIVVYAER KCHLLASALK RCDESCVPEI LFCTSFPGCE MPSWFSHDAI GSMVEFELPP HWNHNRLSGI
1001: ALCVVVSFKN CKSHANLIVK FSCEQNNGEG SSSSITWKVG SLIEQDNQEE TVESDHVFIG YTNCLDFIKL VKGQGGPKCA PTKASLEFSV RTGTGGEATL
1101: EVLKSGFSFV FEPEENRVPS PRNDDVKGKV KINKTPSANG CFKDQAKGNE SPKGQWQTYI ENSSTNIPSE AHSSQKTGFN GFNGMYSVCV LYEMYSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)