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AT5G17900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : microfibrillar-associated protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
microfibrillar-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Micro-fibrillar-associated 1, C-terminal (InterPro:IPR009730); BEST Arabidopsis thaliana protein match is: microfibrillar-associated protein-related (TAIR:AT4G08580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y1JBeggNOG:KOG1425EMBL:AB011480EMBL:AK228482
EMBL:BT005782EMBL:BT006107EMBL:CP002688EnsemblPlants:AT5G17900
EnsemblPlants:AT5G17900.1entrez:831658GeneID:831658Gramene:AT5G17900.1
hmmpanther:PTHR15327hmmpanther:PTHR15327:SF0HOGENOM:HOG000231845InterPro:IPR009730
InterPro:IPR033194KEGG:ath:AT5G17900KO:K13110ncoils:Coil
OMA:EQDVYKRPANTHER:PTHR15327:SF0Pfam:PF06991PhylomeDB:Q9FKN6
Proteomes:UP000006548RefSeq:NP_197292.1STRING:3702.AT5G17900.1TAIR:AT5G17900
UniGene:At.31498UniProt:Q9FKN6
Coordinates (TAIR10) chr5:+:5925144..5926690
Molecular Weight (calculated) 51260.50 Da
IEP (calculated) 4.63
GRAVY (calculated) -1.33
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVTAGVSES AIAVREKLKG GIGQTKVRRY WPGKAPEWAE EAEEDDDVRM QKVSVLDRAF PKNDDLGVAR KDDPRLRRLA KTKVENRDEV RADHRRIRQA
101: EIIYTEEEES RNQENRDEDD DEDALEERRR RIREKNLRRA QEEAALLPLE EEDEIQEEEE EEEESEYETD SEDDMPGIAM IKPVFVPKAE RDTIAERERL
201: EAEEEALEEL AKRKLEQRKL ETKQIVVEEV RKDEEIRKNI LLEEANIGDV ETDDELNEAE EYEVWKTREI GRIKRERDAR EAMLREREEI EKLRNMTEQE
301: RRDWERKNPK PLSAQPKKKW NFMQKYYHKG AFFQADPDDE AGSAGTDGIF QRDFSAPTGE DRLDKSILPK VMQVKHFGRS GRTKWTHLVN EDTTDWSNPW
401: TSNDPLREKY NKKMAGMDAP IAKPKGSKKM KDWES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)