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AT1G65280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock N-terminal domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Protein of unknown function DUF3752 (InterPro:IPR022226); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G22080.2); Has 26180 Blast hits to 20391 proteins in 2424 species: Archae - 138; Bacteria - 5225; Metazoa - 9539; Fungi - 2558; Plants - 2202; Viruses - 36; Other Eukaryotes - 6482 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714eggNOG:KOG4188EMBL:AK226640
EMBL:CP002684EnsemblPlants:AT1G65280EnsemblPlants:AT1G65280.1entrez:842835
Gene3D:1.10.287.110GeneID:842835Gramene:AT1G65280.1hmmpanther:PTHR15606
hmmpanther:PTHR15606:SF3InterPro:IPR001623InterPro:IPR022226KEGG:ath:AT1G65280
ncoils:CoilOMA:MKKRYWKPfam:PF00226Pfam:PF12572
Pfscan:PS50076PhylomeDB:Q0WVU7PRINTS:PR00625PROSITE:PS50076
Proteomes:UP000006548RefSeq:NP_176707.3SMART:SM00271SMR:Q0WVU7
STRING:3702.AT1G65280.1SUPFAM:SSF46565TAIR:AT1G65280UniGene:At.43130
UniProt:Q0WVU7
Coordinates (TAIR10) chr1:+:24245501..24248521
Molecular Weight (calculated) 66503.90 Da
IEP (calculated) 9.25
GRAVY (calculated) -1.12
Length 588 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKHWKRDSD SGDDTPSSAT SSSSSYSSDE SDSSSRKWRK KQKERRKSDG GSYEREKRRK REKERKRKKI ERKERKRRDM KKKKKTKKRE YESDTESYSG
101: SDSFSDQEDD PETVVKEMLL EFPNVGNDLK QLLKMIDDGQ AVDIKGISES TLKKRLKKLF LSLKLKERGD RVFLLPPGAS PSLDVVGHLI KGGEEDVEKS
201: LDDSSPLKET EKGLADENGL GSNSADDVTG PKKRVIGPAM PSAELLAAAA KLTEAQAELR EAELEEDSEY FIGPAPPAVV AEVASSNEAE RFEEVTRIME
301: ADANSPYDVL GVNHNMAADN MKKRYWKLSL LVHPDKCSHP QAQEAFVLLN KAFKELQDPE KRKAMDDKIK LKEEQEAFKV ELRSMQEAAQ WRRSQGISME
401: GDAELLAATE VKPEPKRDEW MTTLPPERKV GVAVQQSTTF SRNAREGRGD TTAWTDTPMD KAERAKMNYL EAYNKASALA SNEGENMKRS MDAELVDKYN
501: KEKRAKSLVE KHREDSSSSS SRLKKKKKLS SSKEKTEKDE WVGKHPWKPW DRENDLTAGR QNVKLDADGM AEGLASKFSS GNFQRSFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)