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AT5G17890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DA1-related protein 4
Curator
Summary (TAIR10)
Encodes a protein that appears to be involved in defense responses. Contains TIR, NB-LRR and LIM domains. A gain of function allele exhibits cold dependent phenotypes including apparent activation of defense responses and an increased freezing tolerance.
Computational
Description (TAIR10)
DA1-related protein 4 (DAR4); FUNCTIONS IN: zinc ion binding, ATP binding; INVOLVED IN: response to cold, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G36140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16933eggNOG:ENOG410XRD4eggNOG:KOG1703EMBL:AB011480
EMBL:AY079160EMBL:CP002688EnsemblPlants:AT5G17890EnsemblPlants:AT5G17890.1
entrez:831657Gene3D:2.10.110.10Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:831657Genevisible:Q9FKN7GO:GO:0005524GO:GO:0006952
GO:GO:0007165GO:GO:0008270GO:GO:0009409GO:GO:0043531
Gramene:AT5G17890.1hmmpanther:PTHR24209hmmpanther:PTHR24209:SF13HOGENOM:HOG000115011
InParanoid:Q9FKN7InterPro:IPR000157InterPro:IPR001781InterPro:IPR002182
InterPro:IPR011713InterPro:IPR011991InterPro:IPR022087InterPro:IPR027417
InterPro:IPR032675iPTMnet:Q9FKN7KEGG:ath:AT5G17890ncoils:Coil
OMA:WAPTEAPPaxDb:Q9FKN7Pfam:PF00412Pfam:PF00931
Pfam:PF07725Pfam:PF12315Pfam:Q9FKN7Pfscan:PS50023
PhylomeDB:Q9FKN7PRIDE:Q9FKN7PRO:PR:Q9FKN7PROSITE:PS00142
PROSITE:PS00478PROSITE:PS50023ProteinModelPortal:Q9FKN7Proteomes:UP000006548
RefSeq:NP_197291.2scanprosite:PS00478SMART:SM00132SMR:Q9FKN7
STRING:3702.AT5G17890.1SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200
SUPFAM:SSF52540SUPFAM:SSF57716TAIR:AT5G17890tair10-symbols:CHS3
tair10-symbols:DAR4UniGene:At.43401UniProt:Q9FKN7
Coordinates (TAIR10) chr5:+:5917015..5923160
Molecular Weight (calculated) 185148.00 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.35
Length 1613 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEPPAARVTP SIKADCSHSV NIICEETVLH SLVSHLSAAL RREGISVFVD ACGLQETKFF SIKQNQPLTD GARVLVVVIS DEVEFYDPWF PKFLKVIQGW
0101: QNNGHVVVPV FYGVDSLTRV YGWANSWLEA EKLTSHQSKI LSNNVLTDSE LVEEIVRDVY GKLYPAERVG IYARLLEIEK LLYKQHRDIR SIGIWGMPGI
0201: GKTTLAKAVF NHMSTDYDAS CFIENFDEAF HKEGLHRLLK ERIGKILKDE FDIESSYIMR PTLHRDKLYD KRILVVLDDV RDSLAAESFL KRLDWFGSGS
0301: LIIITSVDKQ VFAFCQINQI YTVQGLNVHE ALQLFSQSVF GINEPEQNDR KLSMKVIDYV NGNPLALSIY GRELMGKKSE METAFFELKH CPPLKIQDVL
0401: KNAYSALSDN EKNIVLDIAF FFKGETVNYV MQLLEESHYF PRLAIDVLVD KCVLTISENT VQMNNLIQDT CQEIFNGEIE TCTRMWEPSR IRYLLEYDEL
0501: EGSGETKAMP KSGLVAEHIE SIFLDTSNVK FDVKHDAFKN MFNLKFLKIY NSCSKYISGL NFPKGLDSLP YELRLLHWEN YPLQSLPQDF DFGHLVKLSM
0601: PYSQLHKLGT RVKDLVMLKR LILSHSLQLV ECDILIYAQN IELIDLQGCT GLQRFPDTSQ LQNLRVVNLS GCTEIKCFSG VPPNIEELHL QGTRIREIPI
0701: FNATHPPKVK LDRKKLWNLL ENFSDVEHID LECVTNLATV TSNNHVMGKL VCLNMKYCSN LRGLPDMVSL ESLKVLYLSG CSELEKIMGF PRNLKKLYVG
0801: GTAIRELPQL PNSLEFLNAH GCKHLKSINL DFEQLPRHFI FSNCYRFSSQ VIAEFVEKGL VASLARAKQE ELIKAPEVII CIPMDTRQRS SFRLQAGRNA
0901: MTDLVPWMQK PISGFSMSVV VSFQDDYHND VGLRIRCVGT WKTWNNQPDR IVERFFQCWA PTEAPKVVAD HIFVLYDTKM HPSDSEENHI SMWAHEVKFE
1001: FHTVSGENNP LGASCKVTEC GVEVITAATG DTSVSGIIRE SETITIIEKE DTIIDEEDTP LLSRKPEETN RSRSSSELQK LSSTSSKVRS KGNVFWKWLG
1101: CFPLQPKNLR SRSRRTTALE EALEEALKER EKLEDTRELQ IALIESKKIK KIKQADERDQ IKHADEREQR KHSKDHEEEE IESNEKEERR HSKDYVIEEL
1201: VLKGKGKRKQ LDDDKADEKE QIKHSKDHVE EEVNPPLSKC KDCKSAIEDG ISINAYGSVW HPQCFCCLRC REPIAMNEIS DLRGMYHKPC YKELRHPNCY
1301: VCEKKIPRTA EGLKYHEHPF WMETYCPSHD GDGTPKCCSC ERLEHCGTQY VMLADFRWLC RECMDSAIMD SDECQPLHFE IREFFEGLHM KIEEEFPVYL
1401: VEKNALNKAE KEEKIDKQGD QCLMVVRGIC LSEEQIVTSV SQGVRRMLNK QILDTVTESQ RVVRKCEVTA ILILYGLPRL LTGYILAHEM MHAYLRLNGY
1501: RNLNMVLEEG LCQVLGYMWL ECQTYVFDTA TIASSSSSSR TPLSTTTSKK VDPSDFEKRL VNFCKHQIET DESPFFGDGF RKVNKMMASN NHSLKDTLKE
1601: IISISKTPQY SKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)