AT3G47250.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.746 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF247) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G47200.2); Has 1106 Blast hits to 1004 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:17400124..17401566 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54809.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDETRSTSS LSDIAISIID EGPLSPLRQR SERSVVSHIK RNLQSSGKPL ILLESAGKAS CCIFRIPDSL AEVNPKAYKP KVVSIGPYHY GENHLQMIQQ 101: HKFRFLELFV DRATKKGMDE NVLYAAVGAL QHKIRASYSE ELRIEKSELV SMMILDGCFI LMLLLIVSRK IDLDMNKDPI FTIPWILASI QSDLLLLENQ 201: VPFFVLRTIF DKSGIGSPGD LNRMAFSFFN LSIDKPDTYW AKHRDRGAKH LLDLNRKTFI PSMRSMGESE TTPSSKFQHS KGKSGEVSSS ESTFPLILSA 301: KRLRLQGIKF RLRSDAESIL DIKLKKNKLQ IPLLRLDGFI SSIFLNCVAF EQFYTESTND ITSYVVFMGC LLNDQEDATF LNNDKRIIEN YFGNENEVSQ 401: FFKTICKDVV FDTRRSYLRN VFEGVNEYTS KTYNGVWAGF RHTHFESPWT ALSSFAVVFV ILLTMTQAAY AIRSYYHDTE |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)