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AT3G50480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of RPW8 4
Curator
Summary (TAIR10)
Homolog of RPW8
Computational
Description (TAIR10)
homolog of RPW8 4 (HR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: homolog of RPW8 3 (TAIR:AT3G50470.1); Has 106 Blast hits to 90 proteins in 15 species: Archae - 14; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JKFWeggNOG:ENOG411170IEMBL:AF361849EMBL:AK220594
EMBL:AK229528EMBL:AL133363EMBL:BT000848EMBL:CP002686
EMBL:FJ267632EnsemblPlants:AT3G50480EnsemblPlants:AT3G50480.1entrez:824212
GeneID:824212Genevisible:Q9SCS6GO:GO:0009609GO:GO:0009610
GO:GO:0009617GO:GO:0009620GO:GO:0009626GO:GO:0009723
GO:GO:0009751GO:GO:0009753GO:GO:0016021GO:GO:0043207
Gramene:AT3G50480.1hmmpanther:PTHR36766hmmpanther:PTHR36766:SF1InterPro:IPR008808
KEGG:ath:AT3G50480PaxDb:Q9SCS6Pfam:PF05659Pfam:Q9SCS6
Pfscan:PS51153PhylomeDB:Q9SCS6PIR:T46079PRIDE:Q9SCS6
PRO:PR:Q9SCS6PROSITE:PS51153ProteinModelPortal:Q9SCS6Proteomes:UP000006548
RefSeq:NP_566933.1STRING:3702.AT3G50480.1TAIR:AT3G50480tair10-symbols:HR4
TMHMM:TMhelixUniGene:At.66512UniProt:Q9SCS6
Coordinates (TAIR10) chr3:+:18733287..18734180
Molecular Weight (calculated) 23390.70 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.46
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MPIAELAVIK TVGGPLIAAA LGVGAQVIYD GFRKGKDTSI INRLGRTMES ISPVRDRIGK LSNVEGKPFR EVHESLTRLL EDAKSIIEKY WKLRWSRHVC
101: RKYRYIKKLE SIELELVRVA REIQVHQWTD IKEMKAIQVH QWTDIKEMKA IQVDQWTDIK EMKAIQVDQW IDIKEMKAIQ VDQWTDIKEM KAQISEKHNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)