AT1G12730.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.746 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : GPI transamidase subunit PIG-U | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GPI transamidase subunit PIG-U; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: GPI transamidase subunit PIG-U (TAIR:AT1G63110.1); Has 339 Blast hits to 333 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 121; Plants - 55; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:4334675..4337609 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53701.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.14 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.36 | ||||||||||||||||||||||||||||||||
| Length | 474 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEEKKDDGV MAEEKPYMFW IWTLASTIFR LFLIFSPANI NLSSRPEVST PHTSLRRLAE GYWLKQSSLS PYAGSMYHGS PLLLSILGPL TVQRIEGQSS 101: HHLCSLVFVI ADLLSALLLR AIGQKLQKSY RMNLRPLGVL RSSQDRGILP CGDIAALVYL WNPFTILSCV GLSTSPIENL AVIVSLYGAV TRRVPLAAFG 201: LIMATHLSLY SAPLVFPLIF LLGYGLDAPP IKKFLQTRHG GVETGSTSDV SKQEKLTPTT QLPFSWRTVL HFVFWVLVWS SYVLVLCSLS LKQYGGLEEM 301: FKRTYGFILR IEDLSPNIGV FWYFFAEAFE FSRNYLLIIF NLYILLTSIP SLMFRLKHRP CFLAFAYLAF TSILKSYPSV GDAALYLSLW ALFVNELTDM 401: EYSFFIFCGY IGFSLLSPVM HNFWIWRGTG NANFYFGNAM GYACFQFMFV EKSVNAMLNH DQALKKATAE MTKN |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)