suba logo
AT5G54290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cytochrome c biogenesis protein family
Curator
Summary (TAIR10)
Encodes CcdA, a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen.
Computational
Description (TAIR10)
CcdA; CONTAINS InterPro DOMAIN/s: Cytochrome c assembly protein, transmembrane domain (InterPro:IPR003834); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0785eggNOG:ENOG410IGCFEMBL:AB010695EMBL:AF225913
EMBL:AY050929EMBL:AY087199EMBL:AY150405EMBL:CP002688
EnsemblPlants:AT5G54290EnsemblPlants:AT5G54290.1entrez:835517ExpressionAtlas:Q9M5P3
GeneID:835517Genevisible:Q9M5P3GO:GO:0009535GO:GO:0010190
GO:GO:0016021GO:GO:0055035GO:GO:0055114hmmpanther:PTHR31272
hmmpanther:PTHR31272:SF6HOGENOM:HOG000017410InParanoid:Q9M5P3InterPro:IPR003834
PaxDb:Q9M5P3Pfam:PF02683Pfam:Q9M5P3Pfscan:PS51257
PhylomeDB:Q9M5P3PRIDE:Q9M5P3PRO:PR:Q9M5P3ProteinModelPortal:Q9M5P3
Proteomes:UP000006548RefSeq:NP_200240.1STRING:3702.AT5G54290.2TAIR:AT5G54290
tair10-symbols:CcdATCDB:5.A.1.2.5TMHMM:TMhelixUniGene:At.24874
UniGene:At.66770UniProt:Q9M5P3
Coordinates (TAIR10) chr5:+:22051097..22053923
Molecular Weight (calculated) 36532.70 Da
IEP (calculated) 8.19
GRAVY (calculated) 0.63
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLSVNRCIT GGFVGGFSSC RLNHEKRWVR AGKHCELERE RSLVSDAVSL ERLESKSIKL AMLASGLGVA NLVTLSSAKA ADLKMIVLDQ ATSIYILAEG
101: SLGDSVGNFL YSANQQANEA VQDQLSALSV TSLAVIFGAG LVTSLSPCTL SVLPLTLGYI GAFGSGKSRG QVIGDTVAFA LGLATTLALL GIVASFAGKA
201: YGQIGQGLPV AASGLAIVMG LNLLEIIELQ LPSFFNNFDP RAAAANFPSS VQAYLAGLTF ALAASPCSTP VLATLLGYVA TSRDPVIGGS LLLTYTTGYV
301: APLIVAASFA GALQSLLSLR KVSAWINPIS GALLLGGGLY TFLDRLFPAA TMVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)