AT2G27680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-linked oxidoreductase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G06690.1); Has 12729 Blast hits to 12722 proteins in 1987 species: Archae - 303; Bacteria - 10047; Metazoa - 110; Fungi - 525; Plants - 450; Viruses - 0; Other Eukaryotes - 1294 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11803981..11805965 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43157.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.29 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 384 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPVSVHSVIA TNLATTLSSN YRNVSRRRTI STSVNCSVEI TEADRSVKLK NGNDSLEICR VLNGMWQTSG GWGKIDRNDA VDSMLRYADA GLSTFDMADH 101: YGPAEDLYGI FINRVRRERP PEYLEKIKGL TKWVPPPIKM TSSYVRQNID ISRKRMDVAA LDMLQFHWWD YANDGYLDAL KHLTDLKEEG KIKTVALTNF 201: DTERLQKILE NGIPVVSNQV QHSIVDMRPQ QRMAQLCELT GVKLITYGTV MGGLLSEKFL DTNLTIPFAG PRLNTPSLQK YKRMVDAWGG WNLFQGLLRT 301: MKTISTKHGV SIPTVAVRYV LDQQGVGGSM IGVRLGLAEH IQDANAIFSL VLDEEDVNSI QEVTKKGKDL LQVIGDCGDE YRRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)