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AT5G48620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.511
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (CC-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG4658EMBL:AB015468EMBL:AK117163
EMBL:BT005968EMBL:CP002688EnsemblPlants:AT5G48620EnsemblPlants:AT5G48620.1
entrez:834919Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:834919
GO:GO:0005524GO:GO:0005886GO:GO:0006952GO:GO:0043531
Gramene:AT5G48620.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF549HOGENOM:HOG000237753
InParanoid:Q9FJK8InterPro:IPR002182InterPro:IPR027417InterPro:IPR032675
iPTMnet:Q9FJK8KEGG:ath:AT5G48620ncoils:CoilOMA:QMTEYEV
PaxDb:Q9FJK8Pfam:PF00931Pfam:Q9FJK8PhylomeDB:Q9FJK8
PRIDE:Q9FJK8PRO:PR:Q9FJK8ProteinModelPortal:Q9FJK8Proteomes:UP000006548
RefSeq:NP_199673.1SMR:Q9FJK8STRING:3702.AT5G48620.1SUPFAM:SSF52058
SUPFAM:SSF52540TAIR:AT5G48620UniGene:At.47555UniGene:At.49144
UniProt:Q9FJK8
Coordinates (TAIR10) chr5:+:19717406..19720932
Molecular Weight (calculated) 104454.00 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.29
Length 908 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEGFVSFGL EKLWDLLSRE SERLQGIDEQ LDGLKRQLRS LQSLLKDADA KKHGSDRVRN FLEDVKDLVF DAEDIIESYV LNKLRGEGKG VKKHVRRLAR
101: FLTDRHKVAS DIEGITKRIS DVIGEMQSFG IQQIIDGVRS LSLQERQRVQ REIRQTYPDS SESDLVGVEQ SVEELVGHLV ENDIYQVVSI AGMGGIGKTT
201: LARQVFHHDL VRRHFDGFAW VCVSQQFTLK HVWQRILQEL QPHDGNILQM DESALQPKLF QLLETGRYLL VLDDVWKKED WDRIKAVFPR KRGWKMLLTS
301: RNEGVGIHAD PTCLTFRASI LNPEESWKLC ERIVFPRRDE TEVRLDEEME AMGKEMVTHC GGLPLAVKAL GGLLANKHTV PEWKRVSDNI GSQIVGGSCL
401: DDNSLNSVNR ILSLSYEDLP THLKHRFLYL AHFPEDSKIY TQDLFNYWAA EGIYDGSTIQ DSGEYYLEEL VRRNLVIADN RYLSLEFNFC QMHDMMREVC
501: LSKAKEENFL QIIKDPTSTS TINAQSPSRS RRFSIHSGKA FHILGHRNNP KVRSLIVSRF EEDFWIRSAS VFHNLTLLRV LDLSRVKFEG GKLPSSIGGL
601: IHLRYLSLYG AVVSHLPSTM RNLKLLLFLN LRVDNKEPIH VPNVLKEMLE LRYLSLPQEM DDKTKLELGD LVNLEYLWYF STQHSSVTDL LRMTKLRNLG
701: VSLSERCNFE TLSSSLRELR NLEMLNVLFS PEIVMVDHMG EFVLDHFIHL KQLGLAVRMS KIPDQHQFPP HLAHIHLVHC VMKEDPMPIL EKLLHLKSVA
801: LSYGAFIGRR VVCSKGGFPQ LCALGISGES ELEEWIVEEG SMPCLRTLTI HDCEKLKELP DGLKYITSLK ELKIREMKRE WKEKLVPGGE DYYKVQHIPD
901: VQFINCDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)