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AT5G16980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cyclopentenone; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1); Has 15533 Blast hits to 15515 proteins in 1800 species: Archae - 151; Bacteria - 8738; Metazoa - 804; Fungi - 1160; Plants - 566; Viruses - 0; Other Eukaryotes - 4114 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G16980-MONOMERBioCyc:ARA:GQT-1706-MONOMEReggNOG:COG2130eggNOG:KOG1196
EMBL:AK118650EMBL:BT005258EMBL:CP002688EnsemblPlants:AT5G16980
EnsemblPlants:AT5G16980.1entrez:831561ExpressionAtlas:Q8GWT2Gene3D:3.40.50.720
GeneID:831561GO:GO:0008270GO:GO:0016491Gramene:AT5G16980.1
hmmpanther:PTHR11695hmmpanther:PTHR11695:SF537HOGENOM:HOG000294663InterPro:IPR002085
InterPro:IPR011032InterPro:IPR013149InterPro:IPR016040PANTHER:PTHR11695
Pfam:PF00107Pfam:PF16884PhylomeDB:Q8GWT2Proteomes:UP000006548
RefSeq:NP_197200.2SMR:Q8GWT2STRING:3702.AT5G16980.2SUPFAM:SSF50129
SUPFAM:SSF51735TAIR:AT5G16980UniGene:At.22432UniGene:At.31612
UniProt:Q8GWT2
Coordinates (TAIR10) chr5:-:5579202..5580383
Molecular Weight (calculated) 26582.20 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.06
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGVQCYHLT HEHFKIQHTD VPLSYYTGLL GMPGMTAYVG FYEICSPKKG ETVYVSAASG AVGQLVGQFA KMMGCYVVGS AGSKEKVDLL KTKFGFDYAF
101: NYKEEPDLSA ALKRCFPNGI DIYFENVGGK MLDAVLMNMN MHGRIAVCGM ISQYNLENQE GVHNLSNIIY KRIRIQGFVV SDFYDEYSKF LEFLHPHIKE
201: GKITYVEDVA DGLEKGPEAL VGLFHGKNVG KQVVVIARE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)