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AT5G01260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.595
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Carbohydrate-binding-like fold
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Carbohydrate-binding-like fold; FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin-like fold (InterPro:IPR013783), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044); BEST Arabidopsis thaliana protein match is: catalytics;carbohydrate kinases;phosphoglucan, water dikinases (TAIR:AT5G26570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
CAZy:CBM20eggNOG:ENOG410IYPCeggNOG:ENOG41128GGEMBL:AY057624
EMBL:AY143857EMBL:CP002688EnsemblPlants:AT5G01260EnsemblPlants:AT5G01260.1
entrez:831794ExpressionAtlas:Q93ZD1Gene3D:2.60.40.10GeneID:831794
GO:GO:0003824GO:GO:2001070Gramene:AT5G01260.1hmmpanther:PTHR10357
hmmpanther:PTHR10357:SF149HOGENOM:HOG000151152InterPro:IPR002044InterPro:IPR013783
InterPro:IPR013784InterPro:IPR015902KEGG:ath:AT5G01260PANTHER:PTHR10357
Pfam:PF00686Pfscan:PS51166PhylomeDB:Q93ZD1PROSITE:PS51166
Proteomes:UP000006548RefSeq:NP_568087.1SMART:SM01065SMR:Q93ZD1
SUPFAM:SSF49452TAIR:AT5G01260UniGene:At.26244UniProt:Q93ZD1
Coordinates (TAIR10) chr5:+:105367..106488
Molecular Weight (calculated) 34181.20 Da
IEP (calculated) 4.14
GRAVY (calculated) -0.29
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGIGRTLTS SSPSKIILED LPPGIYRYGT EIFTSVPRKT FHHIKFLRLD SAQSSRILKP VPLRSSSIKD SQVNVEDEEI EASNKTVRVR FQLRKECVFG
101: EHFFIVGDDP VFGGLWDPET ALPLNWSDGN VWTVDLDLPV GRLVEFKLLL KAQTGEILWQ PGPNRALETW ETNKTIRICE DWDNADLQMM IEEDFVPYTN
201: ISSIGSEDED EVLGSVQQNS SVVAVENAGY VSDESAQNSS FSIQSEKTME PSNGALTARE VIKEAMFTEE ESPVLVPGLI PLSDLDNEQV EVINEGKAET
301: FPEVIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)