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AT4G01280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G01520.1); Has 1285 Blast hits to 1273 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 1033; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5269eggNOG:KOG0724EMBL:AB493668EMBL:AJ937212
EMBL:AL161491EMBL:AY519513EMBL:BT024711EMBL:CP002687
EnsemblPlants:AT4G01280EnsemblPlants:AT4G01280.1EnsemblPlants:AT4G01280.2entrez:827903
ExpressionAtlas:C0SVG5Gene3D:1.10.10.60GeneID:827903Genevisible:C0SVG5
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009651GO:GO:0009723GO:GO:0009733GO:GO:0009737
GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0046686
hmmpanther:PTHR12802hmmpanther:PTHR12802:SF49HOGENOM:HOG000237512InParanoid:C0SVG5
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
iPTMnet:C0SVG5KEGG:ath:AT4G01280OMA:SSWNHESPaxDb:C0SVG5
Pfam:PF00249Pfscan:PS51294PhylomeDB:C0SVG5PIR:G85016
PRO:PR:C0SVG5PROSITE:PS51294ProteinModelPortal:C0SVG5Proteomes:UP000006548
RefSeq:NP_001031568.1RefSeq:NP_192037.2SMART:SM00717SMR:C0SVG5
STRING:3702.AT4G01280.2SUPFAM:SSF46689TAIR:AT4G01280TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.44234UniProt:Q571Z4
Coordinates (TAIR10) chr4:+:535288..536854
Molecular Weight (calculated) 33793.00 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.66
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSVNPRPKG FPVFDSSNMS LPSSDGFGSI PATGRTSTVS FSEDPTTKIR KPYTIKKSRE NWTDQEHDKF LEALHLFDRD WKKIEAFVGS KTVVQIRSHA
101: QKYFLKVQKS GANEHLPPPR PKRKASHPYP IKAPKNVAYT SLPSSSTLPL LEPGYLYSSD SKSLMGNQAV CASTSSSWNH ESTNLPKPVI EEEPGVSATA
201: PLPNNRCRQE DTERVRAVTK PNNEESCEKP HRVMPNFAEV YSFIGSVFDP NTSGHLQRLK QMDPINMETV LLLMQNLSVN LTSPEFAEQR RLISSYSAKA
301: LK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)