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AT3G46450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14-like 3 (TAIR:AT2G21540.2); Has 1063 Blast hits to 1063 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 333; Plants - 448; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AL133298EMBL:AY094421
EMBL:AY125527EMBL:CP002686EnsemblPlants:AT3G46450EnsemblPlants:AT3G46450.1
entrez:823795ExpressionAtlas:Q9SN94Gene3D:3.40.525.10GeneID:823795
GO:GO:0016021Gramene:AT3G46450.1hmmpanther:PTHR10174hmmpanther:PTHR10174:SF100
HOGENOM:HOG000240519InterPro:IPR001251KEGG:ath:AT3G46450Pfam:PF00650
Pfscan:PS50191PhylomeDB:Q9SN94PIR:T45702PROSITE:PS50191
Proteomes:UP000006548RefSeq:NP_190229.1SMART:SM00516SMR:Q9SN94
STRING:3702.AT3G46450.2SUPFAM:SSF52087SwissPalm:Q9SN94TAIR:AT3G46450
TMHMM:TMhelixUniGene:At.560UniProt:Q9SN94
Coordinates (TAIR10) chr3:-:17093297..17095319
Molecular Weight (calculated) 55389.70 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.33
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDNSGRSRN SMMATVSSGK ELLPKRSLVA AIPRAVQQTI SKHVSFGSNG RFGSGTARNA AVFLLKIAVL EVVRRVSKAK CPHLWNSLQA LQCLCYPPLK
101: WIQRWAPFKE LINAMQMLSR PLLVITIAEA LTDQSELKQE ASGGTNSHAS SESESQSDSQ TLQSPSDIRI EDEAPLPVIS QDWLRKLYEE LEKQRLSLPE
201: RLNEDELHRF YRVSNGDFTS LLSSIKKTIH WRETYRILSE EELETWSSLL FWHGYDKNQR PCLIVRLGLA FLKLPSHERP RFAQAIISQV EHGVLHLLTP
301: ENSELTVLVD CEGLSPLRIP MQMMRSCSSI LQDHFPNRLG CLFIIRLPPV VRVISQTFIQ ILRPTTRKKL RIEGETFHRV LSEYLQTLPS YLGSNCNCKR
401: CSNLNEQDPP QPQTHPRRKR RSSSETEKLD DSHWSYNAQT PDLSYEDEPS LNICSQVLRT AVVFLLMIWL FGALLAGFAD PESRPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)