suba logo
AT5G12840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear factor Y, subunit A1
Curator
Summary (TAIR10)
Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.
Computational
Description (TAIR10)
nuclear factor Y, subunit A1 (NF-YA1); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A9 (TAIR:AT3G20910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16402eggNOG:COG5224eggNOG:KOG1561EMBL:AL353013
EMBL:CP002688EMBL:Y13720EnsemblPlants:AT5G12840EnsemblPlants:AT5G12840.1
EnsemblPlants:AT5G12840.3entrez:831124ExpressionAtlas:Q9LXV5GeneID:831124
Genevisible:Q9LXV5GO:GO:0003677GO:GO:0003700GO:GO:0006351
GO:GO:0006355GO:GO:0009793GO:GO:0010262GO:GO:0016602
GO:GO:0048316GO:GO:0048510GO:GO:0055046hmmpanther:PTHR12632
hmmpanther:PTHR12632:SF14HOGENOM:HOG000239782InParanoid:Q9LXV5InterPro:IPR001289
InterPro:IPR018362KEGG:ath:AT5G12840KO:K08064OMA:DCPNGSE
PANTHER:PTHR12632PaxDb:Q9LXV5Pfam:PF02045Pfam:Q9LXV5
Pfscan:PS51152PhylomeDB:Q9LXV5PIR:T49898PRIDE:Q9LXV5
PRINTS:PR00616PRO:PR:Q9LXV5PROSITE:PS00686PROSITE:PS51152
ProteinModelPortal:Q9LXV5Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_568282.1
RefSeq:NP_850811.1RefSeq:NP_974773.1RefSeq:NP_974774.1scanprosite:PS00686
SMART:SM00521SMR:Q9LXV5STRING:3702.AT5G12840.1TAIR:AT5G12840
tair10-symbols:ATHAP2Atair10-symbols:EMB2220tair10-symbols:HAP2Atair10-symbols:NF-YA1
UniGene:At.5280UniProt:Q1ECD3UniProt:Q9LXV5
Coordinates (TAIR10) chr5:-:4051147..4052961
Molecular Weight (calculated) 30039.60 Da
IEP (calculated) 6.68
GRAVY (calculated) -1.05
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG
101: NDPALSIRNM HDQPLVQPPE LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLGMPR ERTALPLDMA QEPVYVNAKQ YEGILRRRKA RAKAELERKV
201: IRDRKPYLHE SRHKHAMRRA RASGGRFAKK SEVEAGEDAG GRDRERGSAT NSSGSEQVET DSNETLNSSG AP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)