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AT5G19130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GPI transamidase component family protein / Gaa1-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GPI transamidase component family protein / Gaa1-like family protein; FUNCTIONS IN: GPI-anchor transamidase activity; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component (InterPro:IPR017063), Gaa1-like, GPI transamidase component (InterPro:IPR007246); Has 308 Blast hits to 305 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 119; Plants - 43; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT16eggNOG:KOG3566EMBL:CP002688EnsemblPlants:AT5G19130
EnsemblPlants:AT5G19130.1entrez:832033ExpressionAtlas:F4JZM4GeneID:832033
GO:GO:0005783GO:GO:0042765Gramene:AT5G19130.1hmmpanther:PTHR13304
hmmpanther:PTHR13304:SF0InParanoid:F4JZM4InterPro:IPR007246KEGG:ath:AT5G19130
KO:K05289OMA:FRRAGTMPANTHER:PTHR13304PaxDb:F4JZM4
Pfam:PF04114PIRSF:PIRSF036762PRIDE:F4JZM4ProteinModelPortal:F4JZM4
Proteomes:UP000006548RefSeq:NP_197414.2STRING:3702.AT5G19130.1TAIR:AT5G19130
TMHMM:TMhelixUniGene:At.70275UniProt:F4JZM4
Coordinates (TAIR10) chr5:-:6416128..6418993
Molecular Weight (calculated) 77099.80 Da
IEP (calculated) 8.07
GRAVY (calculated) 0.24
Length 699 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVNRDNEE EVKTDDGSPK IKPRPIVRLG IFLIAHSPVF SVVFSAAGVL ALLLLPLLAK NTYISENALM PGSARSMLSN RDVSDGSKLV KDIKNFRLNH
101: EGQGVEVQKL IGKYMSDMGA EVSYQKFHPE GNQFHPLHFF SGPDSYTLLE NVSCASYGVN VAGIIRAPRG DGKESIVLVT PYDFINGGDY EDLSLGIVSS
201: LFSLLSRVTW LSKDIIWLVA DSRYGDYRPV AAWLTEYHSP SFKVSDLLKC DEQNTADNFR RAGTMAAALV LKVDGRSEKF EDTLSIYAEA SNGQMPNLDL
301: INVVNYLAVH RQGFYVKVEK VVSLLSSSWL KIFGEIFEAV GKLAHMLNPD WNFGIPAADY LEGSATLASS LYSQALGIPT GPHGAFRDYQ VDAITLKVSP
401: RFPPDSKTRQ HDFFLRGARL LEGTIRSVNN LLEKFHQSFF LYMLTSPSKF ISVGVYMIAF ALLVAPLPMV AASLYIDGCK SLTNSTHNPT ENFKSWKWLD
501: AAKQVFTLHL LGFIVTLLPY FICQVPGQHS PTNRSIMWGT TSSSLLLITF VTMPGCSPFS SRLHGTNWAI LKSVTISAAF IGLCLMSIIN FATAEIGALL
601: LVPTCLMAQP IKPALRSRRL KSLLGAFCSI VLLTIGFPVM FFAISKGLLG EGLVGLSLGG EFWTWLESLW AWKSATYLYI GMVHLPCWLL CLCILFHPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)