AT5G19130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GPI transamidase component family protein / Gaa1-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GPI transamidase component family protein / Gaa1-like family protein; FUNCTIONS IN: GPI-anchor transamidase activity; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component (InterPro:IPR017063), Gaa1-like, GPI transamidase component (InterPro:IPR007246); Has 308 Blast hits to 305 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 119; Plants - 43; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6416128..6418993 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77099.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.07 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||
| Length | 699 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAVNRDNEE EVKTDDGSPK IKPRPIVRLG IFLIAHSPVF SVVFSAAGVL ALLLLPLLAK NTYISENALM PGSARSMLSN RDVSDGSKLV KDIKNFRLNH 101: EGQGVEVQKL IGKYMSDMGA EVSYQKFHPE GNQFHPLHFF SGPDSYTLLE NVSCASYGVN VAGIIRAPRG DGKESIVLVT PYDFINGGDY EDLSLGIVSS 201: LFSLLSRVTW LSKDIIWLVA DSRYGDYRPV AAWLTEYHSP SFKVSDLLKC DEQNTADNFR RAGTMAAALV LKVDGRSEKF EDTLSIYAEA SNGQMPNLDL 301: INVVNYLAVH RQGFYVKVEK VVSLLSSSWL KIFGEIFEAV GKLAHMLNPD WNFGIPAADY LEGSATLASS LYSQALGIPT GPHGAFRDYQ VDAITLKVSP 401: RFPPDSKTRQ HDFFLRGARL LEGTIRSVNN LLEKFHQSFF LYMLTSPSKF ISVGVYMIAF ALLVAPLPMV AASLYIDGCK SLTNSTHNPT ENFKSWKWLD 501: AAKQVFTLHL LGFIVTLLPY FICQVPGQHS PTNRSIMWGT TSSSLLLITF VTMPGCSPFS SRLHGTNWAI LKSVTISAAF IGLCLMSIIN FATAEIGALL 601: LVPTCLMAQP IKPALRSRRL KSLLGAFCSI VLLTIGFPVM FFAISKGLLG EGLVGLSLGG EFWTWLESLW AWKSATYLYI GMVHLPCWLL CLCILFHPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)