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AT2G23150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18242181 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16984403 (2006): plant-type vacuole
  • PMID:15319477 (2004): plant-type vacuole
  • PMID:12787249 (2003): plant-type vacuole
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : natural resistance-associated macrophage protein 3
Curator
Summary (TAIR10)
Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.
Computational
Description (TAIR10)
natural resistance-associated macrophage protein 3 (NRAMP3); FUNCTIONS IN: manganese ion transmembrane transporter activity, inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: in 10 processes; LOCATED IN: vacuolar membrane, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: natural resistance associated macrophage protein 4 (TAIR:AT5G67330.1); Has 4997 Blast hits to 4957 proteins in 1529 species: Archae - 118; Bacteria - 3577; Metazoa - 372; Fungi - 260; Plants - 341; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).
Protein Annotations
BioGrid:2200eggNOG:COG1914eggNOG:KOG1291EMBL:AC002391
EMBL:AC004401EMBL:AF202539EMBL:AY058203EMBL:CP002685
EnsemblPlants:AT2G23150EnsemblPlants:AT2G23150.1entrez:816847GeneID:816847
Genevisible:Q9SNV9GO:GO:0005215GO:GO:0005773GO:GO:0005774
GO:GO:0005794GO:GO:0006828GO:GO:0009506GO:GO:0009617
GO:GO:0010043GO:GO:0016021GO:GO:0042742GO:GO:0055072
GO:GO:2000379Gramene:AT2G23150.1HAMAP:MF_00221hmmpanther:PTHR11706
hmmpanther:PTHR11706:SF46HOGENOM:HOG000152203InParanoid:Q9SNV9InterPro:IPR001046
KEGG:ath:AT2G23150KO:K12347OMA:ENDAPWLPANTHER:PTHR11706
PaxDb:Q9SNV9Pfam:PF01566Pfam:Q9SNV9PhylomeDB:Q9SNV9
PIR:T00517PRIDE:Q9SNV9PRINTS:PR00447PRO:PR:Q9SNV9
ProteinModelPortal:Q9SNV9Proteomes:UP000006548Reactome:R-ATH-425410Reactome:R-ATH-917937
RefSeq:NP_179896.1SMR:Q9SNV9STRING:3702.AT2G23150.1TAIR:AT2G23150
tair10-symbols:ATNRAMP3tair10-symbols:NRAMP3TIGRfam:TIGR01197TIGRFAMs:TIGR01197
TMHMM:TMhelixUniGene:At.14735UniProt:Q9SNV9
Coordinates (TAIR10) chr2:-:9856422..9858565
Molecular Weight (calculated) 56141.10 Da
IEP (calculated) 4.85
GRAVY (calculated) 0.55
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)