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AT5G47520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPase homolog A5A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A5A (RABA5a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20050eggNOG:COG1100eggNOG:KOG0087EMBL:AB025628
EMBL:AK222160EMBL:AK227772EMBL:BT004809EMBL:CP002688
EnsemblPlants:AT5G47520EnsemblPlants:AT5G47520.1entrez:834802Gene3D:3.40.50.300
GeneID:834802Genevisible:Q9FGK5GO:GO:0005525GO:GO:0005774
GO:GO:0005886GO:GO:0007264GO:GO:0015031Gramene:AT5G47520.1
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF430HOGENOM:HOG000233968InParanoid:Q9FGK5
IntAct:Q9FGK5InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
iPTMnet:Q9FGK5KEGG:ath:AT5G47520KO:K07904OMA:RQTFHSI
PaxDb:Q9FGK5Pfam:PF00071Pfam:Q9FGK5Pfscan:PS51419
PhylomeDB:Q9FGK5PRIDE:Q9FGK5PRO:PR:Q9FGK5PROSITE:PS51419
ProteinModelPortal:Q9FGK5Proteomes:UP000006548RefSeq:NP_199563.1SMR:Q9FGK5
STRING:3702.AT5G47520.1SUPFAM:SSF52540TAIR:AT5G47520tair10-symbols:AtRABA5a
tair10-symbols:RABA5aTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.29886
UniGene:At.29887UniProt:Q9FGK5
Coordinates (TAIR10) chr5:-:19277596..19278366
Molecular Weight (calculated) 24445.90 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.32
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFYSEDDKS EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEIKAQIWDT AGQERFRAVT SAYYRGAVGA LLVYDISRRQ
101: TFHSIGRWLN ELHTHSDMNV VTILVGNKSD LKDLREVSTA EGKALAEAQG LFFMETSALD SSNVAAAFET VVKEIYNILS RKVMSSQELN KQDPASLSNG
201: KKVVIPSDGQ GEFKKGGCCS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)