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AT1G28410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.925
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.2); Has 425 Blast hits to 402 proteins in 77 species: Archae - 4; Bacteria - 22; Metazoa - 249; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ8BeggNOG:ENOG410YQXWEMBL:CP002684EnsemblPlants:AT1G28410
EnsemblPlants:AT1G28410.1entrez:839739GeneID:839739GO:GO:0016021
Gramene:AT1G28410.1hmmpanther:PTHR34360hmmpanther:PTHR34360:SF2InParanoid:F4HY55
KEGG:ath:AT1G28410ncoils:CoilOMA:EVVFFMAPaxDb:F4HY55
PRIDE:F4HY55ProteinModelPortal:F4HY55Proteomes:UP000006548RefSeq:NP_174163.2
STRING:3702.AT1G28410.1TAIR:AT1G28410TMHMM:TMhelixUniGene:At.40894
UniProt:F4HY55
Coordinates (TAIR10) chr1:-:9976596..9979080
Molecular Weight (calculated) 31931.90 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.17
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLHLAALFF IISPLFVFSS QVQQQIGSNQ NLINDLDSAK LRISQLEAVL EATIQKLDGK TLYLKEREKL IQVAETQILD LQSASYIDKS GLPLVQKRIS
101: ELEEEVKLLW AALRTTNFEL HVLEDKAREA KNKLKAKALE VEQMTEVVTE QWIQVQHLEQ MREFNNRRHH TPSRCPFVKL MSDIQRKHLP KVDEAFDIHW
201: KGKKVLSVQP YLTKALSQLK SLWAAVTKYH HQLQGFIEHE MERTEITAAL ANREVVFFMA SALITFPVFG AWMLLSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)