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AT3G07880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.770
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Immunoglobulin E-set superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SUPERCENTIPEDE1 (SCN1); FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: root epidermal cell differentiation, cell tip growth; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1); Has 660 Blast hits to 660 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 162; Plants - 120; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111K44eggNOG:KOG3205EMBL:AK118247EnsemblPlants:AT3G07880
EnsemblPlants:AT3G07880.1entrez:819979ExpressionAtlas:Q541X0Gene3D:2.70.50.30
GeneID:819979GO:GO:0005094GO:GO:0005737Gramene:AT3G07880.1
hmmpanther:PTHR10980hmmpanther:PTHR10980:SF18InterPro:IPR000406InterPro:IPR014756
InterPro:IPR024792iPTMnet:Q541X0KEGG:ath:AT3G07880KO:K12462
OMA:DWTFEIKPANTHER:PTHR10980PaxDb:Q541X0Pfam:PF02115
Pfam:Q9SFC6PhylomeDB:Q541X0PRIDE:Q541X0PRIDE:Q9SFC6
PRINTS:PR00492ProteinModelPortal:Q541X0RefSeq:NP_187445.1SMR:Q541X0
STRING:3702.AT3G07880.1SUPFAM:SSF81296TAIR:AT3G07880tair10-symbols:SCN1
UniGene:At.23029UniProt:Q541X0UniProt:Q9SFC6
Coordinates (TAIR10) chr3:+:2514175..2515544
Molecular Weight (calculated) 27232.60 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.85
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)