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AT2G44900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARABIDILLO-1
Curator
Summary (TAIR10)
ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.
Computational
Description (TAIR10)
ARABIDILLO-1 (ARABIDILLO-1); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARABIDILLO-2 (TAIR:AT3G60350.1); Has 10074 Blast hits to 5287 proteins in 284 species: Archae - 0; Bacteria - 24; Metazoa - 4121; Fungi - 736; Plants - 4117; Viruses - 0; Other Eukaryotes - 1076 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHA3eggNOG:ENOG410ZZ0BEMBL:AC002388EMBL:CP002685
EnsemblPlants:AT2G44900EnsemblPlants:AT2G44900.1entrez:819099Gene3D:1.25.10.10
Gene3D:3.80.10.10GeneID:819099Genevisible:O22161GO:GO:0005634
GO:GO:0048527Gramene:AT2G44900.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF91
HOGENOM:HOG000029512InParanoid:O22161InterPro:IPR000225InterPro:IPR001810
InterPro:IPR006553InterPro:IPR011989InterPro:IPR016024InterPro:IPR032675
KEGG:ath:AT2G44900ncoils:CoilOMA:SPCLWSAPaxDb:O22161
Pfam:O22161Pfam:PF00514Pfscan:PS50176PhylomeDB:O22161
PIR:T00403PRIDE:O22161PRO:PR:O22161PROSITE:PS50176
ProteinModelPortal:O22161Proteomes:UP000006548RefSeq:NP_566029.1SMART:SM00185
SMART:SM00256SMART:SM00367SMR:O22161STRING:3702.AT2G44900.1
SUPFAM:SSF48371SUPFAM:SSF52047TAIR:AT2G44900tair10-symbols:ARABIDILLO-1
tair10-symbols:ARABIDILLO1UniGene:At.53128UniProt:O22161
Coordinates (TAIR10) chr2:-:18511719..18515762
Molecular Weight (calculated) 100648.00 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.02
Length 930 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRVRRKLE EEKGKDKVVV LPSYPETSIS NEEDLVAPEL LHGFVDWISL PYDTVLQLFT CLNYRDRASL ASTCKTWRCL GASSCLWTSL DLRPHKFDAS
101: MAASLASRCV NLHYLRFRGV ESADSLIHLK ARNLIEVSGD YCKKITDATL SMIVARHEAL ESLQLGPDFC ERITSDAIKA VAFCCPKLKK LRLSGIRDVT
201: SEAIEALAKH CPQLNDLGFL DCLNIDEEAL GKVVSVRYLS VAGTSNIKWS IASNNWDKLP KLTGLDVSRT DIGPTAVSRF LTSSQSLKVL CALNCHVLEE
301: DESLISYNRF KGKVLLALFT NVFDGLASIF ADNTKKPKDI FAYWRELMKT TKDKTINDFI HWIEWIISHT LLRTAECNPE GLDDFWLNEG AALLLNLMQS
401: SQEDVQERSA TGLATFVVVD DENASIDCGR AEAVMKDGGI RLLLELAKSW REGLQSEAAK AIANLSVNAN IAKSVAEEGG IKILAGLAKS MNRLVAEEAA
501: GGLWNLSVGE EHKNAIAQAG GVKALVDLIF RWPNGCDGVL ERAAGALANL AADDKCSMEV AKAGGVHALV MLARNCKYEG VQEQAARALA NLAAHGDSNN
601: NNAAVGQEAG ALEALVQLTK SPHEGVRQEA AGALWNLSFD DKNRESISVA GGVEALVALA QSCSNASTGL QERAAGALWG LSVSEANSVA IGREGGVPPL
701: IALARSEAED VHETAAGALW NLAFNPGNAL RIVEEGGVPA LVHLCSSSVS KMARFMAALA LAYMFDGRMD EYALMIGTSS SESTSKNISL DGARNMALKH
801: IEAFVLSFID PHIFESPVVS STPTMLAQVT ERARIQEAGH LRCSGAEIGR FVTMLRNPDS TLKACAAFAL LQFTIPGGRH AMHHVSLMQN GGESRFLRSA
901: AASAKTPREA KIFTKILLRN LEHHQAESSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)