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AT3G11540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.
Computational
Description (TAIR10)
SPINDLY (SPY); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 77055 Blast hits to 28756 proteins in 2442 species: Archae - 2374; Bacteria - 35241; Metazoa - 12084; Fungi - 2779; Plants - 2385; Viruses - 3; Other Eukaryotes - 22189 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1691-MONOMERBioCyc:ARA:GQT-1692-MONOMERBioGrid:5661BRENDA:2.4.1.255
CAZy:GT41EC:2.4.1.-eggNOG:COG3914eggNOG:ENOG410IRRE
EMBL:AC008153EMBL:AK220931EMBL:AK221192EMBL:AK221314
EMBL:CP002686EMBL:U62135EnsemblPlants:AT3G11540EnsemblPlants:AT3G11540.1
entrez:820327ExpressionAtlas:Q96301Gene3D:1.25.40.10GeneID:820327
Genevisible:Q96301GO:GO:0005634GO:GO:0005737GO:GO:0005829
GO:GO:0006486GO:GO:0009736GO:GO:0009740GO:GO:0009908
GO:GO:0009938GO:GO:0016262GO:GO:0030154GO:GO:0048511
GO:GO:2000377hmmpanther:PTHR23083hmmpanther:PTHR23083:SF397HOGENOM:HOG000030819
InParanoid:Q96301IntAct:Q96301InterPro:IPR001440InterPro:IPR006597
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR029489
iPTMnet:Q96301KEGG:ath:AT3G11540OMA:KLYPQYTPaxDb:Q96301
Pfam:PF00515Pfam:PF13374Pfam:PF13414Pfam:PF13424
Pfam:PF13844Pfam:Q96301Pfscan:PS50005Pfscan:PS50293
PhylomeDB:Q96301PRIDE:Q96301PRO:PR:Q96301PROSITE:PS50005
PROSITE:PS50293ProteinModelPortal:Q96301Proteomes:UP000006548RefSeq:NP_187761.1
SMART:SM00028SMART:SM00671SMR:Q96301STRING:3702.AT3G11540.1
SUPFAM:SSF48452TAIR:AT3G11540tair10-symbols:SPYUniGene:At.17656
UniPathway:UPA00378UniProt:Q96301UniProt:W8QNP6
Coordinates (TAIR10) chr3:+:3632842..3637547
Molecular Weight (calculated) 101435.00 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.21
Length 914 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)