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AT3G20650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mRNA capping enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mRNA capping enzyme family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: mRNA capping; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: mRNA (guanine-N(7))-methyltransferase (InterPro:IPR016899), mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G52210.1); Has 916 Blast hits to 903 proteins in 291 species: Archae - 0; Bacteria - 22; Metazoa - 149; Fungi - 179; Plants - 106; Viruses - 144; Other Eukaryotes - 316 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G20650-MONOMERBioCyc:ARA:GQT-2065-MONOMERBioGrid:6944EC:2.1.1.56
eggNOG:ENOG410Y7HGeggNOG:KOG1975EMBL:AK228381EMBL:AP002034
EMBL:BT005804EMBL:BT006067EMBL:CP002686EnsemblPlants:AT3G20650
EnsemblPlants:AT3G20650.1entrez:821612ExpressionAtlas:Q9LHQ7Gene3D:3.40.50.150
GeneID:821612Genevisible:Q9LHQ7GO:GO:0003723GO:GO:0004482
GO:GO:0005634hmmpanther:PTHR12189HOGENOM:HOG000242614InParanoid:Q9LHQ7
InterPro:IPR004971InterPro:IPR016899InterPro:IPR029063KEGG:ath:AT3G20650
KO:K00565OMA:DEQFAHVPaxDb:Q9LHQ7Pfam:PF03291
Pfam:Q9LHQ7Pfscan:PS51562PhylomeDB:Q9LHQ7PIRSF:PIRSF028762
PRIDE:Q9LHQ7PRO:PR:Q9LHQ7PROSITE:PS51562ProteinModelPortal:Q9LHQ7
Proteomes:UP000006548Reactome:R-ATH-72086Reactome:R-ATH-77075RefSeq:NP_188701.2
SMR:Q9LHQ7STRING:3702.AT3G20650.1SUPFAM:SSF53335TAIR:AT3G20650
UniGene:At.43009UniProt:Q9LHQ7
Coordinates (TAIR10) chr3:-:7221168..7223939
Molecular Weight (calculated) 42239.80 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.55
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRGFSDSPS SSAPPPSSRF KSNPEGDSQF LEDETTKNFA RKVADHYSRR TNQTLEEREA SPIIHLKKLN NWIKSVLIQL YARPDDAVLD LACGKGGDLI
101: KWDKARIGYY VGIDIAEGSI EDCRTRYNGD ADHHQRRKKF SFPSRLLCGD CFEVELDKIL EEDAPFDICS CQFAMHYSWT TEARARRALA NVSALLRPGG
201: VFIGTMPDAN VIIKKLREAE GLEIGNSVYW IRFGEEYSQK KFKSSSPFGI EYVFHLEDAV DCPEWIVPFN VFKSLAEEYD LELVFVKNSH EFVHEYMKKP
301: EFVELMRRLG ALGDGSNDQS TLSADEWEAA YLYLSFVLRK RGESDGARRS GRRKNGKMNL SKDDVLYIDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)