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AT1G05270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TraB family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT2G32340.1); Has 779 Blast hits to 750 proteins in 262 species: Archae - 153; Bacteria - 256; Metazoa - 121; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1916eggNOG:KOG2860EMBL:AK117963EMBL:AK175736
EMBL:BT005323EMBL:CP002684EnsemblPlants:AT1G05270EnsemblPlants:AT1G05270.1
entrez:837027GeneID:837027GO:GO:0031307Gramene:AT1G05270.1
hmmpanther:PTHR21530hmmpanther:PTHR21530:SF0HOGENOM:HOG000006130InterPro:IPR002816
KEGG:ath:AT1G05270OMA:RPTGDISPfam:PF01963PhylomeDB:Q8GXY6
Proteomes:UP000006548RefSeq:NP_172019.3STRING:3702.AT1G05270.1TAIR:AT1G05270
TMHMM:TMhelixUniGene:At.42412UniProt:Q8GXY6
Coordinates (TAIR10) chr1:-:1531806..1534305
Molecular Weight (calculated) 40744.00 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.04
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIEPTQSPS SEPEVHSGED FVHIDDPRPT GDISLSDSIV NVEKDELLDE AAEEEFRGSD SVFSGGDGGG ADDDGGECSS EATKVELPEE LAKSVVILTC
101: ESTADGGSCD VYLVGTAHVS KQSCLEVEAI ISILKPEVVF VELCSSRLSV LKPQTLKIPT MSDMIESWKQ KQNTFGILYG WFLAKIASHL EVFPGAEFRV
201: AYEEAIKYGG KVILGDRPVQ ITLKRTWAKM PLWHKVKFLY SILFQAVFLP GAEELEKMLK DMDNVDMVTL VIQEMSKEFP TLMDTIVHER DQYMASSLLR
301: VASDHSSVVA VIGKGHINGI KKNWKQPITM NDLMEIPSDK SVFTLKRIIS SVAVAVAGTA IVSGILLSRR K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)