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AT3G20970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:21841088 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NFU domain protein 4
Curator
Summary (TAIR10)
Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion.
Computational
Description (TAIR10)
NFU domain protein 4 (NFU4); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075), HIRA-interacting protein 5 (InterPro:IPR017065), NIF system FeS cluster assembly, NifU-like scaffold, N-terminal (InterPro:IPR014824); BEST Arabidopsis thaliana protein match is: NFU domain protein 5 (TAIR:AT1G51390.1); Has 6036 Blast hits to 5990 proteins in 1590 species: Archae - 18; Bacteria - 3114; Metazoa - 168; Fungi - 162; Plants - 179; Viruses - 3; Other Eukaryotes - 2392 (source: NCBI BLink).
Protein Annotations
BioGrid:6979eggNOG:COG0694eggNOG:KOG2358EMBL:AF370537
EMBL:AJ512936EMBL:AP001304EMBL:AY072509EMBL:CP002686
EnsemblPlants:AT3G20970EnsemblPlants:AT3G20970.1entrez:821647ExpressionAtlas:Q9LIG6
Gene3D:3.30.1370.70GeneID:821647Genevisible:Q9LIG6GO:GO:0005198
GO:GO:0005506GO:GO:0005739GO:GO:0016226GO:GO:0051536
hmmpanther:PTHR11178hmmpanther:PTHR11178:SF1HOGENOM:HOG000023557InParanoid:Q9LIG6
IntAct:Q9LIG6InterPro:IPR001075InterPro:IPR014824InterPro:IPR017065
iPTMnet:Q9LIG6OMA:PVRYMFIPANTHER:PTHR11178:SF1PaxDb:Q9LIG6
Pfam:PF01106Pfam:PF08712Pfam:Q9LIG6PhylomeDB:Q9LIG6
PRIDE:Q9LIG6PRO:PR:Q9LIG6ProDom:PD002830ProteinModelPortal:Q9LIG6
Proteomes:UP000006548RefSeq:NP_566673.1SMART:SM00932SMR:Q9LIG6
STRING:3702.AT3G20970.1SUPFAM:0042426SUPFAM:SSF110836SUPFAM:SSF117916
TAIR:AT3G20970tair10-symbols:ATNFU2tair10-symbols:NFU4UniGene:At.20822
UniProt:Q9LIG6
Coordinates (TAIR10) chr3:+:7348277..7350069
Molecular Weight (calculated) 30506.20 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.12
Length 283 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGIARLVTS LSRIGGRKVV SGTSTVTSSS SSSLLLSRRS LFISATNLLN SRTKDSALPS LNSSLLAQKW NFLGGQRRTM FIQTQSTPNP SSLMFYPGKP
101: VMEVGSADFP NVRSALGSPL AKSIYSIDGV VRVFFGSDFV TVTKSDDVSW DILKPEIFAA VMDFYSSGQP LFLDSQAAAA KDTAISEDDS ETVAMIKELL
201: ETRIRPAVQD DGGDIEYCGF DPESGIVKLR MQGACSGCPS SSVTLKSGIE NMLMHYVSEV KGVEQEFDGE DEEGTLSGEM RVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)