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AT5G53540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G53540-MONOMEReggNOG:COG0464eggNOG:KOG0737EMBL:AB015476
EMBL:AY058857EMBL:BT002644EMBL:CP002688EnsemblPlants:AT5G53540
EnsemblPlants:AT5G53540.1entrez:835436Gene3D:3.40.50.300GeneID:835436
GO:GO:0000502GO:GO:0005524GO:GO:0016021GO:GO:0016787
Gramene:AT5G53540.1hmmpanther:PTHR23074hmmpanther:PTHR23074:SF20HOGENOM:HOG000225141
InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR027417
KEGG:ath:AT5G53540OMA:EAVFINVPfam:PF00004PhylomeDB:Q9FJC9
PROSITE:PS00674Proteomes:UP000006548RefSeq:NP_200166.1scanprosite:PS00674
SMART:SM00382SMR:Q9FJC9STRING:3702.AT5G53540.1SUPFAM:SSF52540
TAIR:AT5G53540TMHMM:TMhelixUniGene:At.26650UniProt:Q9FJC9
Coordinates (TAIR10) chr5:-:21749561..21751099
Molecular Weight (calculated) 44850.80 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.25
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRSSGRKDS NFIEQLILYV ASAALSSLVL YVGLRQLDPN RDAAKKSLEH KREIAKRLGR PLIQTNQYED VIACDVINPL HIDVEFGSIG GLESIKQALY
101: ELVILPLKRP ELFAYGKLLG PQKGVLLYGP PGTGKTMLAK AIARESEAVF INVKVSNLMS KWFGDAQKLV SAVFSLAYKL QPAIIFIDEV DSFLGQRRST
201: DNEAMSNMKT EFMALWDGFT TDQNARVMVL AATNRPSELD EAILRRFPQS FEIGMPDCQE RAQILKVVLK GESVESDINY DRIARLCEDY TGSDIFELCK
301: KAAYFPIREI LEAEKEGKRV SVPRPLTQLD LEKVLATSKK TQVAASEYTG LSSQSSVWGS PSNADEVQAA INGISKLFVS QLRNIQPDSQ DSYQQHPSEG
401: DSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)