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AT5G42740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sugar isomerase (SIS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sugar isomerase (SIS) family protein; FUNCTIONS IN: glucose-6-phosphate isomerase activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to cadmium ion, gluconeogenesis, glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglucose isomerase, conserved site (InterPro:IPR018189), Phosphoglucose isomerase (PGI) (InterPro:IPR001672); BEST Arabidopsis thaliana protein match is: phosphoglucose isomerase 1 (TAIR:AT4G24620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G42740-MONOMERBioGrid:19533BRENDA:5.3.1.9EC:5.3.1.9
eggNOG:COG0166eggNOG:KOG2446EMBL:AB007647EMBL:AB044948
EMBL:AB044949EMBL:AB044950EMBL:AB044951EMBL:AB044952
EMBL:AB044953EMBL:AB044954EMBL:AB044955EMBL:AB044956
EMBL:AB044957EMBL:AB044958EMBL:AB044959EMBL:AB044960
EMBL:AB044961EMBL:AB044962EMBL:AB044963EMBL:AB044964
EMBL:AB044965EMBL:AB044966EMBL:AB044967EMBL:AF372970
EMBL:AJ419524EMBL:AY093962EMBL:CP002688EMBL:X69195
EnsemblPlants:AT5G42740EnsemblPlants:AT5G42740.1entrez:834283Gene3D:1.10.1390.10
GeneID:834283Genevisible:P34795GO:GO:0004347GO:GO:0005829
GO:GO:0006094GO:GO:0006096GO:GO:0009817GO:GO:0046686
Gramene:AT5G42740.1gramene_pathway:5.3.1.9gramene_pathway:GLYCOLYSISgramene_pathway:PWY-5659
gramene_pathway:PWY-621gramene_pathway:PWY-622gramene_pathway:PWYQT-4428HAMAP:MF_00473
hmmpanther:PTHR11469hmmpanther:PTHR11469:SF1InParanoid:P34795InterPro:IPR001672
InterPro:IPR018189InterPro:IPR023096KEGG:00010+5.3.1.9KEGG:00030+5.3.1.9
KEGG:00500+5.3.1.9KEGG:00520+5.3.1.9KEGG:ath:AT5G42740KO:K01810
OMA:SHLIAPYPANTHER:PTHR11469PaxDb:P34795Pfam:P34795
Pfam:PF00342Pfscan:PS51463PhylomeDB:P34795PIR:S41808
PRIDE:P34795PRINTS:PR00662PRO:PR:P34795PROSITE:PS00174
PROSITE:PS00765PROSITE:PS51463ProteinModelPortal:P34795Proteomes:UP000006548
Reactome:R-ATH-5628897Reactome:R-ATH-70171Reactome:R-ATH-70263RefSeq:NP_199088.1
scanprosite:PS00174scanprosite:PS00765SMR:P34795STRING:3702.AT5G42740.1
SUPFAM:SSF53697TAIR:AT5G42740UniGene:At.20998UniPathway:UPA00109
UniProt:P34795
Coordinates (TAIR10) chr5:+:17136080..17140622
Molecular Weight (calculated) 61721.10 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.11
Length 560 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSTALICD TEAWKDLKGH VEDIKKTHLR DLMSDANRCQ SMMMEFDGLL LDYSRQRATV ETMDKLLNLA KASQLTEKIS RMFNGEHINS TENRSVLHVA
101: LRAPKDAVIK ADGMNVVPEV WNVLDKIKEF SDKIRSGSWV GATGKPLKDV IAIGIGGSFL GPLFVHTALQ TDPEALESAK GRQLRFLANI DPVDVARNIS
201: GLNPETTLVV VVSKTFTTAE TMLNARTLRE WITAALGASA VAKHMVAVST NLALVEKFGI DPNNAFAFWD WVGGRYSVCS AVGVLPLSLQ YGFSMVEKFL
301: KGASSIDQHF QSTPFEKNIP VLLGLLSVWN VSFLGYPARA ILPYSQALEK FAPHIQQVSM ESNGKGVSID GLPLPFETGE IDFGEPGTNG QHSFYQLIHQ
401: GRVIPCDFIG IVKSQQPVYL KGEVVSNHDE LMSNFFAQPD ALAYGKTPEQ LQKENVSENL IPHKTFSGNR PSLSLLLPEL TAYNVGQLLA IYEHRVAVQG
501: FVWGINSFDQ WGVELGKVLA TQVRKQLHSS RTQGTAPEGF NYSTTTLLKR YLETSSEPQM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)