AT5G63890.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : histidinol dehydrogenase | ||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes histidinol dehydrogenase. Up-regulated in response to UV-B. | ||||||||||||||||||||
| Computational Description (TAIR10) |
histidinol dehydrogenase (HDH); FUNCTIONS IN: histidinol dehydrogenase activity; INVOLVED IN: response to UV, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Histidinol dehydrogenase, conserved site (InterPro:IPR001692), Histidinol dehydrogenase, prokaryotic-type (InterPro:IPR012131); Has 9090 Blast hits to 9090 proteins in 2188 species: Archae - 179; Bacteria - 4137; Metazoa - 4; Fungi - 211; Plants - 72; Viruses - 0; Other Eukaryotes - 4487 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:25565600..25567879 | ||||||||||||||||||||
| Molecular Weight (calculated) | 48959.60 Da | ||||||||||||||||||||
| IEP (calculated) | 5.10 | ||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||
| Length | 452 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNEFVDQLRF TGYVCCSMKS YRLSELSSSQ VDSLKSRPRI DFSSIFATVN PIIDAVRSNG DNAVKEYTER FDKVQLNKVV EDMSELSVPE LDSNVKEAFD 101: VAYDNIYAFH LAQKSTEKSV ENMKGVRCKR VSRSIGSVGL YVPGGTAVLP STALMLAIPA QIAGCKTVVL ATPPSKDGSI CKEVLYCAKR AGVTHILKAG 201: GAQAIAAMAW GTDSCPKVEK IFGPGNQYVT AAKMILQNSE AMVSIDMPAG PSEVLVIADE HASPVYIAAD LLSQAEHGPD SQVVLVVVGD SVDLNAIEEE 301: IAKQCKSLPR GEFASKALSH SFTVFARDMI EAISFSNLYA PEHLIINVKD AEKWEGLIEN AGSVFIGPWT PESVGDYASG TNHVLPTYGY ARMYSGVSLD 401: SFLKFMTVQS LTEEGLRNLG PYVATMAEIE GLDAHKRAVT LRLKDIEAKQ LA |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)