AT3G59150.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.641 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.2); Has 1506 Blast hits to 1463 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1502; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:+:21872729..21874422 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 57838.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.78 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 509 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFIVFSFSHT RKTCEFCDRI QLSISQGFEN PNLSMEANKK AKPSYGDVIS NLPNDLLCRI LSYLSTKEAA LTSILSKRWS NLLLSIPILD FDDSVLLKPQ 101: KGQRKNVFFK AFVDRLLSQR VETSSHVQRV SLKCRQGGVE PDCVIKWILT TVRDLGVLDL SLCIDFGIFH LPFNVFRSKT LVKLRIGTMI RLSQFPSDVV 201: SPTLNSLVLD LVEFRDGDKV EFRQILLAFP SLQSLRVHES NKWKFWNGSA SSRTLKSLVY RSDDDSSAPK PCVSFDTPSL VYLDYSDMVA DKYENLKFDS 301: LVEARLDLHL TAFQIMRKPN NIGIVSGDVT TLFKGIRNVK ILCLSPDALE ALYYRGEKIP MFNNLITLSL GSDKPHGSPF IFWKLLPSLL NNSLKLETLI 401: IKGLVHYVAE GWEGLSPMTP MSRLCFSWDT VSDSLSSSAM KVLEISGYKG TWQELNQMKR FLGNLSRLEV VRVYHKAMDD KERINVMFDL FLLPKVSSEC 501: DIQVMKETA |
||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)