suba logo
AT3G15357.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, hypocotyl, root, leaf; Has 6931 Blast hits to 2036 proteins in 230 species: Archae - 7; Bacteria - 933; Metazoa - 1824; Fungi - 836; Plants - 482; Viruses - 218; Other Eukaryotes - 2631 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU11eggNOG:ENOG41107BBEMBL:AY085841EMBL:BT024820
EMBL:CP002686EnsemblPlants:AT3G15357EnsemblPlants:AT3G15357.1entrez:820774
GeneID:820774Gramene:AT3G15357.1KEGG:ath:AT3G15357OMA:SETFPVM
Proteomes:UP000006548RefSeq:NP_566510.1TAIR:AT3G15357UniGene:At.39059
UniProt:Q8LDR8
Coordinates (TAIR10) chr3:+:5187164..5187595
Molecular Weight (calculated) 16079.30 Da
IEP (calculated) 4.18
GRAVY (calculated) -0.94
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MASASSSAAR SLIRDGKSLT NLFLRGRKIN LTETVQNNGP AIRSLLCFNQ MPAASQYPVY SETFPVMKSG LRVGFVQKEA VSERVGKMEA AHGKRVVDNK
101: DADSEEDTDF DEDEIDDVDF EDDEDSDEDD EEEEDDKYTR KKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)