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AT3G23830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich RNA-binding protein 4
Curator
Summary (TAIR10)
encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.
Computational
Description (TAIR10)
glycine-rich RNA-binding protein 4 (GRP4); CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 2 (TAIR:AT4G13850.3); Has 39778 Blast hits to 39772 proteins in 2962 species: Archae - 777; Bacteria - 23781; Metazoa - 723; Fungi - 392; Plants - 1153; Viruses - 36; Other Eukaryotes - 12916 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AP001297EMBL:AY070755
EMBL:AY085838EMBL:AY097374EMBL:CP002686EnsemblPlants:AT3G23830
EnsemblPlants:AT3G23830.1EnsemblPlants:AT3G23830.2entrez:821966Gene3D:3.30.70.330
GeneID:821966Genevisible:Q9LIS2GO:GO:0000166GO:GO:0003690
GO:GO:0003697GO:GO:0003723GO:GO:0005739GO:GO:0006970
GO:GO:0009409GO:GO:0009414GO:GO:0009651GO:GO:1900864
Gramene:AT3G23830.1Gramene:AT3G23830.2hmmpanther:PTHR24012HOGENOM:HOG000276232
InParanoid:Q9LIS2InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT3G23830
OMA:CEDSANNPaxDb:Q9LIS2Pfam:PF00076Pfam:Q9LIS2
Pfscan:PS50102PhylomeDB:Q9LIS2PRIDE:Q9LIS2PRO:PR:Q9LIS2
PROSITE:PS50102ProteinModelPortal:Q9LIS2Proteomes:UP000006548RefSeq:NP_189025.1
RefSeq:NP_850629.1SMART:SM00360SMR:Q9LIS2STRING:3702.AT3G23830.1
SUPFAM:SSF54928SwissPalm:Q9LIS2TAIR:AT3G23830tair10-symbols:GR-RBP4
tair10-symbols:GRP4UniGene:At.8272UniProt:Q9LIS2
Coordinates (TAIR10) chr3:-:8606762..8607677
Molecular Weight (calculated) 14129.50 Da
IEP (calculated) 8.73
GRAVY (calculated) -0.33
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFCNKLSGI LRQGVSQSSN GPVTSMLGSL RYMSSKLFVG GLSWGTDDSS LKQAFTSFGE VTEATVIADR ETGRSRGFGF VSFSCEDSAN NAIKEMDGKE
101: LNGRQIRVNL ATERSSAPRS SFGGGGGYGG GGGGGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)