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AT4G12600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 1766 Blast hits to 1766 proteins in 400 species: Archae - 342; Bacteria - 0; Metazoa - 560; Fungi - 254; Plants - 271; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1358eggNOG:KOG3387EMBL:AF361618EMBL:AL049730
EMBL:AL161534EMBL:AY055095EMBL:CP002687EnsemblPlants:AT4G12600
EnsemblPlants:AT4G12600.1entrez:826873ExpressionAtlas:Q9SU26Gene3D:3.30.1330.30
GeneID:826873GO:GO:0003723GO:GO:0005730GO:GO:0005840
GO:GO:0042254Gramene:AT4G12600.1hmmpanther:PTHR23105hmmpanther:PTHR23105:SF57
InterPro:IPR002415InterPro:IPR004037InterPro:IPR004038InterPro:IPR018492
InterPro:IPR029064ncoils:CoilPfam:PF01248PhylomeDB:Q9SU26
PIR:C85135PRINTS:PR00881PRINTS:PR00883PROSITE:PS01082
Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_192997.1
scanprosite:PS01082SMR:Q9SU26STRING:3702.AT4G22380.1SUPFAM:SSF55315
TAIR:AT4G12600UniGene:At.3234UniProt:Q9SU26
Coordinates (TAIR10) chr4:+:7453296..7454208
Molecular Weight (calculated) 14000.10 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.01
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVEGVNPKA YPLADSQLSI TILDLVQQAT NYKQLKKGAN EATKTLNRGI SEFIVMAADT EPLEILLHLP LLAEDKNVPY VFVPSKQALG RACDVTRPVI
101: ACSVTSNEAS QLKSQIQHLK DAIEKLLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)