suba logo
AT3G58700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L5P family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: Ribosomal L5P family protein (TAIR:AT5G45775.2); Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312; Bacteria - 5083; Metazoa - 254; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).
Protein Annotations
BioGrid:10354BioGrid:12900BioGrid:19866eggNOG:COG0094
eggNOG:KOG0397EMBL:AB012245EMBL:AF326876EMBL:AF339697
EMBL:AF385722EMBL:AL035526EMBL:AL161549EMBL:AL353032
EMBL:AY039570EMBL:AY078021EMBL:AY085232EMBL:AY086211
EMBL:AY086300EMBL:AY129487EMBL:CP002686EMBL:CP002687
EMBL:CP002688EMBL:X81798EMBL:X81800EMBL:Z29034
EnsemblPlants:AT3G58700EnsemblPlants:AT3G58700.1EnsemblPlants:AT4G18730.1EnsemblPlants:AT5G45775.2
entrez:825039entrez:827607entrez:834617Gene3D:3.30.1440.10
GeneID:825039GeneID:827607GeneID:834617Genevisible:P42794
GO:GO:0000027GO:GO:0003735GO:GO:0005773GO:GO:0006412
GO:GO:0016020GO:GO:0019843GO:GO:0022625GO:GO:0022626
hmmpanther:PTHR11994hmmpanther:PTHR11994:SF14HOGENOM:HOG000231312InParanoid:P42794
InterPro:IPR002132InterPro:IPR020929InterPro:IPR022803InterPro:IPR031309
InterPro:IPR031310iPTMnet:P42794KEGG:ath:AT3G58700KEGG:ath:AT4G18730
KEGG:ath:AT5G45775KO:K02868OMA:HRINNTEPaxDb:P42794
Pfam:P42794Pfam:PF00281Pfam:PF00673PhylomeDB:P42794
PIR:S49033PIR:T49153PIRSF:PIRSF002161PRIDE:P42794
PRO:PR:P42794PROSITE:PS00358ProteinModelPortal:P42794Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_191429.1RefSeq:NP_567563.1
RefSeq:NP_568649.2RefSeq:NP_851137.1scanprosite:PS00358SMR:P42794
STRING:3702.AT5G45775.2SUPFAM:SSF55282TAIR:AT3G58700TAIR:AT4G18730
TAIR:AT5G45775UniGene:At.18929UniGene:At.22889UniProt:P42794
Coordinates (TAIR10) chr3:+:21711661..21712816
Molecular Weight (calculated) 20862.40 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.47
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)