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AT3G62940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4424 Blast hits to 3467 proteins in 474 species: Archae - 10; Bacteria - 494; Metazoa - 1270; Fungi - 452; Plants - 292; Viruses - 20; Other Eukaryotes - 1886 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5539eggNOG:KOG2606EMBL:AY062840EMBL:AY081578
EMBL:CP002686EMBL:JQ013450EnsemblPlants:AT3G62940EnsemblPlants:AT3G62940.1
entrez:825469ExpressionAtlas:Q8W457GeneID:825469Gramene:AT3G62940.1
hmmpanther:PTHR12419hmmpanther:PTHR12419:SF10HOGENOM:HOG000192906IntAct:Q8W457
InterPro:IPR003323ncoils:CoilPfam:PF02338Pfscan:PS50802
PROSITE:PS50802Proteomes:UP000006548RefSeq:NP_850739.1SMR:Q8W457
STRING:3702.AT3G62940.2SUPFAM:SSF54001TAIR:AT3G62940UniGene:At.27217
UniProt:Q8W457
Coordinates (TAIR10) chr3:-:23263106..23264197
Molecular Weight (calculated) 35673.80 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.98
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MDASQEQQHE TVEEMLARHR QEIKQLQNKE TEMKKAAAKG SKAEQKAKKK QVEDDISKLS TKLKDKQLKE LASQGFSSSS SNNIAKDETT EKKGDIDTLV
101: RAIAGVSVTA QQEHSKPSKS VKRREKRAKE EADREQRIKE EQSHVKSDRM VENAKLEKKL KPLGLTVSEI KPDGHCLYRA VENQLANRSG GASPYTYQNL
201: REMAASYMRE HKTDFLPFFL SETEGDSNSG SAEERFEKYC REVESTAAWG SQLELGALTH CLRKHIKVYS GSFPDVEMGK EYRSGDDSSL MLSYHRHAFG
301: LGEHYNSVVL VNNITG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)