AT3G62940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4424 Blast hits to 3467 proteins in 474 species: Archae - 10; Bacteria - 494; Metazoa - 1270; Fungi - 452; Plants - 292; Viruses - 20; Other Eukaryotes - 1886 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23263106..23264197 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35673.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||||||
| Length | 316 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDASQEQQHE TVEEMLARHR QEIKQLQNKE TEMKKAAAKG SKAEQKAKKK QVEDDISKLS TKLKDKQLKE LASQGFSSSS SNNIAKDETT EKKGDIDTLV 101: RAIAGVSVTA QQEHSKPSKS VKRREKRAKE EADREQRIKE EQSHVKSDRM VENAKLEKKL KPLGLTVSEI KPDGHCLYRA VENQLANRSG GASPYTYQNL 201: REMAASYMRE HKTDFLPFFL SETEGDSNSG SAEERFEKYC REVESTAAWG SQLELGALTH CLRKHIKVYS GSFPDVEMGK EYRSGDDSSL MLSYHRHAFG 301: LGEHYNSVVL VNNITG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)