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AT1G33470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22910.2); Has 6684 Blast hits to 6582 proteins in 1312 species: Archae - 0; Bacteria - 3263; Metazoa - 486; Fungi - 360; Plants - 2166; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111PGTeggNOG:KOG0149EMBL:AK176398EMBL:CP002684
EnsemblPlants:AT1G33470EnsemblPlants:AT1G33470.1entrez:840240ExpressionAtlas:Q67YS0
Gene3D:3.30.70.330GeneID:840240GO:GO:0000166GO:GO:0003676
Gramene:AT1G33470.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF421HOGENOM:HOG000276232
InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G33470OMA:MEDTTFT
Pfam:PF00076Pfscan:PS50102PhylomeDB:Q67YS0PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_174613.2SMART:SM00360SMR:Q67YS0
STRING:3702.AT1G33470.1SUPFAM:SSF54928TAIR:AT1G33470UniGene:At.17522
UniGene:At.67846UniProt:Q67YS0
Coordinates (TAIR10) chr1:+:12144632..12146040
Molecular Weight (calculated) 26235.80 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.21
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TQSYYNVYGG ATAQHPMYGS GPMTGVAAAP AAGFYPYLQF AEGNGPVTGY
201: APLHYPNHMF HYSAPGGNYP HHNGSPVSLA PSPVIPSVCF AVPQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)