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AT3G56680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Single-stranded nucleic acid binding R3H protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT2G40960.1); Has 389 Blast hits to 389 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 53; Plants - 134; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZICFeggNOG:KOG2953EMBL:AL390921EMBL:AY074572
EMBL:AY086793EMBL:AY116940EMBL:CP002686EnsemblPlants:AT3G56680
EnsemblPlants:AT3G56680.1entrez:824835Gene3D:3.30.1370.50GeneID:824835
GO:GO:0003676Gramene:AT3G56680.1hmmpanther:PTHR15672hmmpanther:PTHR15672:SF15
HOGENOM:HOG000241438IntAct:Q9LET8InterPro:IPR001374InterPro:IPR024771
KEGG:ath:AT3G56680OMA:VSIKTRPPfam:PF01424Pfam:PF12752
Pfscan:PS51061Pfscan:PS51673PhylomeDB:Q9LET8PIR:T51256
PROSITE:PS51061PROSITE:PS51673Proteomes:UP000006548RefSeq:NP_191227.1
SMART:SM00393SMR:Q9LET8STRING:3702.AT3G56680.1SUPFAM:SSF82708
TAIR:AT3G56680UniGene:At.21220UniProt:Q9LET8
Coordinates (TAIR10) chr3:+:20991537..20993446
Molecular Weight (calculated) 40230.30 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.73
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)