AT3G01990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.901 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ACT domain repeat 6 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ACT domain repeat 6 (ACR6); FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 4 (TAIR:AT1G69040.1); Has 3173 Blast hits to 1993 proteins in 619 species: Archae - 0; Bacteria - 2121; Metazoa - 0; Fungi - 0; Plants - 561; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:330256..332066 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48745.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 433 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDDEYAKLI RRMNPPRVVI DNNASDDATV IQVDSVNKHG TLLEVVQVLT DMNLVIKKAY ISSDGGWFMD VFKVIDQDGN KIRDTQVLDY IQKRIESNAG 101: WFIPPLRSSV GVMPTDEYTS IELAGTDRPG LLSEVSAVLT DLHCNVVNAE IWTHNTRAAA VIHVTDNSTH SAITDPIRLS TIKELLCNVV RTNSGSRAAK 201: TVFSCSDTHR ERRLHQIMFD DRDYEGVKRA RTSASRPSVT LMNIEKDYTV VTMRSKDRPK LVFDVVCTLT DMQYVVFHGM VSTEPVEAYQ EFYIRHVDGL 301: PINSEAEQER VIQCLEAAIE RRASEGLELE LSAEDRVGLL SDITRTFREN SLTIVRAEIS TREGKAKDTF YVTDVTGNPV ESKIVESIRQ QIGVSKLKVK 401: KKEKEHCSVL GTSRPSHETT TMGYLLSNIF KPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)