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AT3G03910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:18998720 (2009): extracellular region
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate dehydrogenase 3
Curator
Summary (TAIR10)
GDH3 encodes a member of the glutamate dehydrogenease family. Its expression is upregulated in response to cytokinin and it may play a role in the control of nitrogen metabolism in leaf development.
Computational
Description (TAIR10)
glutamate dehydrogenase 3 (GDH3); FUNCTIONS IN: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: regulation of nitrogen compound metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), Glutamate dehydrogenase (InterPro:IPR014362), NAD(P)-binding domain (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: glutamate dehydrogenase 1 (TAIR:AT5G18170.1); Has 8937 Blast hits to 8931 proteins in 2306 species: Archae - 305; Bacteria - 5351; Metazoa - 356; Fungi - 208; Plants - 399; Viruses - 0; Other Eukaryotes - 2318 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G03910-MONOMEREC:1.4.1.3eggNOG:COG0334eggNOG:KOG2250
EMBL:AC009540EMBL:AC011698EMBL:CP002686EnsemblPlants:AT3G03910
EnsemblPlants:AT3G03910.1entrez:821072Gene3D:3.40.50.720GeneID:821072
Genevisible:Q9S7A0GO:GO:0004353GO:GO:0005739GO:GO:0006520
GO:GO:0051171Gramene:AT3G03910.1hmmpanther:PTHR11606hmmpanther:PTHR11606:SF12
HOGENOM:HOG000243801InParanoid:Q9S7A0InterPro:IPR006095InterPro:IPR006096
InterPro:IPR006097InterPro:IPR014362InterPro:IPR016040iPTMnet:Q9S7A0
KEGG:ath:AT3G03910KO:K00261OMA:EVNADECPaxDb:Q9S7A0
Pfam:PF00208Pfam:PF02812Pfam:Q9S7A0PhylomeDB:Q9S7A0
PIRSF:PIRSF000185PRIDE:Q9S7A0PRINTS:PR00082PRO:PR:Q9S7A0
PROSITE:PS00074ProteinModelPortal:Q9S7A0Proteomes:UP000006548Reactome:R-ATH-70614
RefSeq:NP_187041.1scanprosite:PS00074SMART:SM00839SMR:Q9S7A0
STRING:3702.AT3G03910.1SUPFAM:SSF51735SUPFAM:SSF53223TAIR:AT3G03910
tair10-symbols:GDH3UniGene:At.27423UniGene:At.53173UniProt:Q9S7A0
Coordinates (TAIR10) chr3:+:1006913..1008846
Molecular Weight (calculated) 44530.40 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.20
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS ELSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLNEH
201: GKTISGQRFA IQGFGNVGSW AAKLISDKGG KIVAVSDVTG AIKNNNGIDI LSLLEHAEEN RGIKGFDGAD SIDPDSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEG ANHPTDPEAD EILKKKGVMI LPDIYANSGG VTVSYFEWVQ NIQGFMWDEE KVNRELKTYM TRGFKDLKEM CQTHSCDLRM GAFTLGINRV
401: AQATTIRGWG S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)