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AT3G54860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec1/munc18-like (SM) proteins superfamily
Curator
Summary (TAIR10)
Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.
Computational
Description (TAIR10)
ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1699 Blast hits to 1677 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 432; Plants - 184; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
Protein Annotations
BioGrid:9967eggNOG:COG5158eggNOG:KOG1302EMBL:AF357527
EMBL:AL049655EMBL:CP002686EnsemblPlants:AT3G54860EnsemblPlants:AT3G54860.1
entrez:824651ExpressionAtlas:Q94KJ7Gene3D:3.40.50.1910GeneID:824651
Genevisible:Q94KJ7GO:GO:0005774GO:GO:0006904GO:GO:0031902
GO:GO:0043234hmmpanther:PTHR11679hmmpanther:PTHR11679:SF1HOGENOM:HOG000166771
InParanoid:Q94KJ7InterPro:IPR001619InterPro:IPR027121InterPro:IPR027482
iPTMnet:Q94KJ7PANTHER:PTHR11679PANTHER:PTHR11679:SF1PaxDb:Q94KJ7
Pfam:PF00995Pfam:Q94KJ7PhylomeDB:Q94KJ7PIRSF:PIRSF005715
PRIDE:Q94KJ7PRO:PR:Q94KJ7ProteinModelPortal:Q94KJ7Proteomes:UP000006548
RefSeq:NP_567009.1SMR:Q94KJ7STRING:3702.AT3G54860.2SUPFAM:SSF56815
TAIR:AT3G54860tair10-symbols:ATVPS33tair10-symbols:VPS33UniGene:At.19074
UniProt:Q94KJ7
Coordinates (TAIR10) chr3:-:20324286..20329841
Molecular Weight (calculated) 66916.20 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.14
Length 592 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQIPSLENA PLNLKSIRDK SERELVNLLK DVRGTKCLVI DPKLSGSVSL IIPTSKLKEL GLELRHLTAE PVQTECTKVV YLVRSQLSFM KFIASHIQND
101: IAKAIQRDYY VYFVPRRSVA CEKILEQEKV HNLVTVKEFP LYMVPLDEDV ISFELELSEK DCLVDGDVSS LWHIAKAIHE LEFSFGVISK MRAKGKASVR
201: VADILNRMQV EEPVNSNDVG RPEVDTLILL DREVDMVTPM CSQLTYEGLI DEILHISNGA VEVDSSVMGA QQEGKKMKVP LNSSDKLFKE TRDLNFEVVV
301: QVLRQKAMTM KEDYTEINST QTVSELKDFV KKLNSLPEMT RHIHLAQHLT TFTSKQSFNS QLDMEQTLVE AENYDICYEY IEEMIHKQEP LTNVLRLLVL
401: FSVTNSGLPK KQFDYIRMEL LHSYGFEHVV TLNNLEKAGL LKKQEFKSNW LTVKRTLKLI VEDTDTSRPN DIAYVYSGYA PLSIRLIQQA IHSGWRPMED
501: ILKLLPGPHL ETKRSGFPSS PSVDSLHGAS NGVADGRRSI VLVVFIGGVT FAEISALRYL ASKEGMAYDL IVATTKIVNG ATLIETFMEK LG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)