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AT2G28070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: white-brown complex homolog protein 11 (TAIR:AT1G17840.1); Has 248098 Blast hits to 239858 proteins in 3812 species: Archae - 4857; Bacteria - 200822; Metazoa - 5202; Fungi - 4273; Plants - 3947; Viruses - 6; Other Eukaryotes - 28991 (source: NCBI BLink).
Protein Annotations
BioGrid:2701eggNOG:COG1131eggNOG:KOG0061EMBL:AC005851
EMBL:AC006929EMBL:CP002685EnsemblPlants:AT2G28070EnsemblPlants:AT2G28070.1
entrez:817351Gene3D:3.40.50.300GeneID:817351Genevisible:Q9ZUU9
GO:GO:0005524GO:GO:0005886GO:GO:0016021GO:GO:0042626
GO:GO:0055085Gramene:AT2G28070.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF200
InParanoid:Q9ZUU9InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525
InterPro:IPR027417iPTMnet:Q9ZUU9KEGG:ath:AT2G28070MINT:MINT-8059814
OMA:KMYGEVFPaxDb:Q9ZUU9Pfam:PF00005Pfam:PF01061
Pfam:Q9ZUU9Pfscan:PS50893PIR:D84680PRIDE:Q9ZUU9
PRO:PR:Q9ZUU9PROSITE:PS50893ProteinModelPortal:Q9ZUU9Proteomes:UP000006548
Reactome:R-ATH-1369062Reactome:R-ATH-265473RefSeq:NP_850111.1SMART:SM00382
SMR:Q9ZUU9STRING:3702.AT2G28070.1SUPFAM:SSF52540TAIR:AT2G28070
TCDB:3.A.1.204.19TMHMM:TMhelixUniGene:At.52946UniProt:Q9ZUU9
Coordinates (TAIR10) chr2:+:11956432..11959782
Molecular Weight (calculated) 81043.60 Da
IEP (calculated) 9.23
GRAVY (calculated) 0.14
Length 730 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEIQSQSDL YRSSSSSASS PTSRVPSSHF FYVRKPGSLR QPISFEDSPE WEDTPDVDLR MEDEAGGGDS INDATTTPVS PSLSKMNSGS MASPPVPEGG
101: AGTGVVRKIA GASIAWKDLT VTMKGKRKYS DKVVKSSNGY AFPGTMTVIM GPAKSGKSTL LRALAGRLPP SAKMYGEVFV NGSKSHMPYG SYGFVERETQ
201: LIGSLTVREF LYYSALLQLP GFLFQKRSVV EDAIQAMSLS DYANKLIGGH CYMKGLRSGE RRRVSIAREL VMRPHILFID EPLYHLDSVS ALLMMVTLKK
301: LASMGCTLVF TIYQSSTEVF GLFDRICLLS NGNTLFFGET LACLQHFSNA GFPCPIMQSP SDHFLRAINT DFDRIIAMCK NWQDDNGDFS AVNMDTAVAI
401: RTLEATYKSS ADADSVEAMI IKLTEREGTQ LKSKGKAGAA TRVAVLTWRS LLVMSREWKY YWLRLILYMI LTLSIGTLYS GLGHSLSSVA TRVAAVFVFV
501: SFASLLGIAG IPSLLKEIKI YRSEASNQHS GAFVFLLGQF LGSIPFLFLM SISSSLVFYF MVGLRDDFSL LMYFVLNFFM CLLVNEGLML FIACIWRDVY
601: WSTLTLISVH VIMMLAAGHF RIRTALPKPV WTYPFAYISF HTYSIEGLLE NEYLGEVFAV GEVRSISGYQ AIQGNYQISP DTNAKWRNML VLLAMAFGYR
701: LLVYVLLRFG LNKNVSGRLL LSHKKNNSSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)