AT4G12840.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.422 endoplasmic reticulum 0.379 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF707) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT4G18530.1); Has 319 Blast hits to 319 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:7533621..7535832 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45278.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLLYSLPFQ GSLSMNQKRK GLSLRRLFSL VFFLAMIFLI GNAFITVDYK EGIAGWSSII RLNLAKLKMC KTQLRPPGSE TLPRGIVAST SDLEMRPLWG 101: AKRDKKPKPS LLAMAVGIRQ KESVNKIVKK FPSSEFVVML FHYDGAVDEW KEFEWSDTAI HISVVNQTKW WFAKRFLHPD IVSAYSYIFL WDEDLGVDHF 201: DARRYVSIIK EEKLEISQPA LDPNFSEVHH QLTSRDKKSR VHRRTYKVIG RARCNENSTG PPCTGFVEMM APVFSRAAWR CTWHMIQNDL NHGWGIDFQL 301: GYCAQGDRTK NIGIVDSEYI LHMGLPTLGG GSAENKTDSG KLDKTKTPHA ADKSSSVSTG RTEVRKQTYV ELETFKHRWK NAVKNDECWI DRFQT |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)