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AT1G35780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVKNeggNOG:ENOG4111HUREMBL:AC021198EMBL:AF428333
EMBL:AY063902EMBL:AY122925EMBL:CP002684EnsemblPlants:AT1G35780
EnsemblPlants:AT1G35780.1entrez:840483GeneID:840483Gramene:AT1G35780.1
hmmpanther:PTHR31132hmmpanther:PTHR31132:SF2HOGENOM:HOG000239183InterPro:IPR025131
KEGG:ath:AT1G35780OMA:SVYEENDPfam:PF13266PhylomeDB:Q9LP18
PIR:A86480Proteomes:UP000006548RefSeq:NP_564463.1TAIR:AT1G35780
UniGene:At.25479UniGene:At.74755UniProt:Q9LP18
Coordinates (TAIR10) chr1:-:13277778..13280113
Molecular Weight (calculated) 31072.30 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.70
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNTPVRKP HMSTADLLTW PENQPFESPA AVSSRSAARS HQPSDGISKV VFGGQVTDEE VESLNKRKPC SNYKMKEITG SGIFSVYEEN DDSELASANS
101: ATNGKSRTFQ QPPAAIMSHI SFGEEEIVTP KKPATVPEVA KQRELSGTLE YQSDAKLNKQ FSDAKCKELS GHNIFAPPPE IKLRPTVRAL AYKDNFDLGE
201: SDTKPDGELK TAKKIADRKF TDLSGNNVFK SDVSSPSSAT AERLLSTAKL KEISGNDIFA DAKAQSRDYF GGVRKPPGGE SSIALV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)