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AT3G51720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF827)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT2G38370.1); Has 6489 Blast hits to 5290 proteins in 766 species: Archae - 144; Bacteria - 987; Metazoa - 2963; Fungi - 406; Plants - 677; Viruses - 9; Other Eukaryotes - 1303 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJN6eggNOG:ENOG410YE8YEMBL:AL132968EMBL:AY069905
EMBL:AY088925EMBL:AY113026EMBL:CP002686EnsemblPlants:AT3G51720
EnsemblPlants:AT3G51720.1entrez:824335GeneID:824335Genevisible:Q9SCT6
Gramene:AT3G51720.1hmmpanther:PTHR32054hmmpanther:PTHR32054:SF4HOGENOM:HOG000240040
InParanoid:Q9SCT6InterPro:IPR008545KEGG:ath:AT3G51720ncoils:Coil
OMA:TAEVRCIPaxDb:Q9SCT6Pfam:PF05701Pfam:Q9SCT6
PhylomeDB:Q9SCT6PIR:T46068PRIDE:Q9SCT6PRO:PR:Q9SCT6
ProteinModelPortal:Q9SCT6Proteomes:UP000006548RefSeq:NP_190740.1STRING:3702.AT3G51720.1
TAIR:AT3G51720UniGene:At.28434UniProt:Q9SCT6
Coordinates (TAIR10) chr3:+:19185119..19186518
Molecular Weight (calculated) 45956.50 Da
IEP (calculated) 10.07
GRAVY (calculated) -0.67
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETLEPSLV GEIDTSAPFE SVREAATRFG GFGFWKPSSL NISEASQNEV GMVLKASELE KELIEKEGET LKVLKSLEST KAIVEELKSK IQNKEDKENC
101: DMNVFKELNQ AKMNLCKTTK DLAAIRVSVG LLNKRLEEER AALEKTRERL NSENAAEMSM EIQRLSYEAK EFSRTGENVR YAVNKAVAEI EQTRNKIEAA
201: EMRLIAARKM KEAARAAEAV AIAEIKAVTR RGRRRRRGGN GEETMQEEIL ETIDETAREI RSSRRTLEEG LAKMEAEEGN WWWTEQRRRS SCSAKFKNPP
301: YMMDVKGLNM MMNGDGTSSS VAVLKPTMSI GQILSRKLLL ADESAMMMNG RVSLGQILGK TNFGDREKEK RFNGKRKRFG FANLSVMLNK ESKKKNKKKK
401: IALNLSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)